Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272064g00009 ATGGAAAATGTTAGGGAGGATCATCATGAGATTGAGGACATGTCAATGTCACCACCTTCTGTTGGTTCCATGCAAATAGCTGGAAGCAATGGCTTTGTTCACAGCATGGAGTTCATGTCTCAGGCATATCTTCCAAATAGGTACTCAGAAGTTGTCCTTCAAGTTGAGGATTCAAACATCAACCAAGATCCTCCACTCCCCATATACCTTAAGTTTGAGGATGTAGAGTACAAAGTGAAAAATAGCCAAACAGATTCCACCAACCCTGTGAAGATGGTATCAAAGGTGGCCACACAGCAAGTGGAACAACAAGAAAGATACAAGAAGATCCTTAAGGGTATCACAGGGAGCATTGGCCCTGGTGAAATTCTTGCTTTGATGGGTCCTTCTGGCAGTGGAAAAACAACTTTGTTGAGAGTAATTGGAGGAAGATTACTTGAGAATGTAAAGGGAAACATCACTTATAATGATGTCAGATTTAATCCTGCTATAAAGAGAAGGATTGGATTTGTTACACAACAGGATGTGCTTTTCCCACAACTTTCAGTAGAAGAAACATTGATCTTCTCTGCATTCTTAAGGCTACCTACCAACATGAGCAAGCAACAAAAATATGCAAAAGTGGAAACCACTATCAAGGAGTTAGGCCTTGAAAGATGTCGGCACACGAAAATCGGTGGAGGATTTCTAAAAGGCATATCAGGAGGAGAAAGGAAGAGAACTAGCATAGGCTATGAAATTCTTGTTGATCCTTCATTGCTGCTACTTGATGAACCAACTTCAGGCCTTGATTCAACCTCAGCAAACAAACTCCTCCTCACTCTTCAAGGACTTGCCAAGGGTGGAAGGACCATAATAACTACAATTCACCAACCATCAAGCAGAATCTTTCATATGTTTGACAAACTTCTTCTGATATCGGAAGGCTATCCTGTTTACTATGGAAAGGCTAGAGACTCAATGGAATACTTTTCTTCGTTGAGATTCGCCCCGGAGATACCGATGAATCCTGCAGAGTTCTTGCTTGACTTGGCAACTGGTCAAGTGAATGACATAAGTGTTCCTCAAGAAATCTTGGGAGATCAAGAATCTTCTGACCCTTCAAAAGCTGTTACTAAATATCTAAAACTCAAGTATAAAGAAATTCTGGACCCAAAAGAAAAGCTAGAGAACCATGGAGTGGTGAACACACCAAAACATCTTCAGCTAGCAATTCAGGTTAAGAAAGAGTGGACACTGAGTTGGTTGGACCAATTCATCATTCTTTATAAGAGAACATTCACAGCAAGATGCAAGGACTACTTTGATAAATTAAGGCTAATTCAAGCCCTTGGAATTGCAATTATTTTGGGGCTGCTTTGGTGGAAATCCTCAACCAACACAGAGGCTCAACTAAGAGATCAGGTTGGTTTAATGTTCTATATCTGCATATTTTGGACATCTTCATGCATCTTTGGAGCAGTCTATGTCTTTCCATTTGAGAAGGTCTACATAGTTAAAGAAAGGAAAGCAGACATGTACAGATTAAGTGTATACTATGCATGCAGCACTCTAAGTGACATGGTAGCACATGTTTTCTATCCTACTTTCTTCATGATTATCTTGTACTTCATGGCCGGATTTAAGAGGACAGCCGCATGCTTTTTCTTAACACTCTTCGCAGTTCTGTTAATAGCCGTAACAAGTCAAGGTGCAGGAGAACTATTTGGAGCTGCAGTTATGAGCATTCAAAGAGCAGGAATGGTTGCTTCTTTGATACTAATGTTATTCCTTCTAACTGGTGGCTACTATGTGCAGCACATACCAAAGTTCATGCAGTGGATGAAGTACCTTTCATACATGTACTATGGATTCAGACTTCTTCTAAAAGTGCAGTATTCAGGAGATGAACTCTATGAGTGTGAGAGCAAAGGAGGGTGTAGGACCCTTCAAAGTTCACCTTCATTTGACACTGTTAATTTGAAAGGTGGCTTACAAGAAGTTTGGATTCTCATAGCCATGGCATTATGCTTCCGTTTTCTTGCTTACTTCTGCCTCAAGAGAAAGATTGATGTATGCAGTTATTAG 2067 0.4035 MENVREDHHEIEDMSMSPPSVGSMQIAGSNGFVHSMEFMSQAYLPNRYSEVVLQVEDSNINQDPPLPIYLKFEDVEYKVKNSQTDSTNPVKMVSKVATQQVEQQERYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLLENVKGNITYNDVRFNPAIKRRIGFVTQQDVLFPQLSVEETLIFSAFLRLPTNMSKQQKYAKVETTIKELGLERCRHTKIGGGFLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLLTLQGLAKGGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKARDSMEYFSSLRFAPEIPMNPAEFLLDLATGQVNDISVPQEILGDQESSDPSKAVTKYLKLKYKEILDPKEKLENHGVVNTPKHLQLAIQVKKEWTLSWLDQFIILYKRTFTARCKDYFDKLRLIQALGIAIILGLLWWKSSTNTEAQLRDQVGLMFYICIFWTSSCIFGAVYVFPFEKVYIVKERKADMYRLSVYYACSTLSDMVAHVFYPTFFMIILYFMAGFKRTAACFFLTLFAVLLIAVTSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYVQHIPKFMQWMKYLSYMYYGFRLLLKVQYSGDELYECESKGGCRTLQSSPSFDTVNLKGGLQEVWILIAMALCFRFLAYFCLKRKIDVCSY 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272064g00009 688 Pfam ABC transporter 111 261 IPR003439 GO:0005524
Stsc272064g00009 688 SMART AAA_5 120 311 IPR003593 GO:0016887
Stsc272064g00009 688 MobiDBLite consensus disorder prediction 1 20 - -
Stsc272064g00009 688 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 96 333 IPR003439 GO:0005524
Stsc272064g00009 688 FunFam ABC transporter G family member 22 98 327 - -
Stsc272064g00009 688 Pfam ABC-2 type transporter 418 626 IPR013525 GO:0016020|GO:0140359
Stsc272064g00009 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 325 IPR027417 -
Stsc272064g00009 688 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 56 675 - -
Stsc272064g00009 688 CDD ABCG_EPDR 67 315 - -
Stsc272064g00009 688 Pfam ABC-2 type transporter 290 350 IPR043926 GO:0140359
Stsc272064g00009 688 Gene3D - 94 328 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272064g00009 Stsc-Chr272064 35545 39977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272064g00009 109 294 Calmodulin-binding Proteins AT2G36910 29.688 1.47e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272064g00009 K05681 - gmx:100815259 1173.3