Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272064g00007 ATGTTTCCAATGAATTCTAGGTGCTTCCTTCCACAAGAGTCCTTATTCATCAACTCAAGCAGCATGGCTTCATTTTCTTCAAATTCTGCACCACCAGCAGCAGCAGAAGATAGCAGGGTGAATAGTACCCGAAACCGGCCTCTTCCACGTGCCTCCCCGCCTTCATTTTTGGTTCAGATGGCGATGAGGGTATCCAGAGCAAGATGGTTTACCTTCTTGAGAAGAGTGTTCCATTACCAAAATGGATCAAGGTCAAACCTTGGCTCTAATCCTTTCAATACTAGAACATGGATGATGATGGAGTTTATAGCTTTAATGGTTCAGATAATCACAATAACATTCACTTTGGCTATTTCGAAAAGCGAGAGGCCTGTTTGGCCTATGAGGATTTGGTCAGCTGGTTATGATATTGGATGTGTTCTTAATCTGCTGCTACTTTATGGTCGGTACCGGCAAATTTGTGCGAGTCAAGGAGATGTTCTCAGCTTTTCTGATATTGAACAACAGAGAAGCAATGAAGAAACCAGCGTATACAGGATTTCCCATTTGATGAACAAGTGCAGGACATCACTTGATCTTTTCTTTGCAATTTGGTTTGTGATGGGAAATGTTTGGGTCTTCGACTCGCGTTTCGGATCCTTTAACCAAGCTCCAAAGCTCCATGTTCTTTGCATCACACTGCTTGCATGGAATGCAATATGTTACTCTTTCCCTTTCCTTCTGTTTCTGCTCTTGTGTTGCTGTGTGCCTCTAACTAGCCGGCTCCTCGGCTACAACATGAATATGGGATCTTCTGACAAAGGAGCATCTGATGATCAAATCTCACAACTTCCAAGTTGGAGATATAAAGAATCACATAACAAGTTAGAGTTCGGCAACAAGGATTCCGAAAGCAGTGAGAAATTGATCAATGAGGACTCAGAATGCTGTATTTGCTTGGCAAAGTACAAAGAGAAAGAAGAAGTTAGACAATTGCCATGTTCCCATGTATTCCACCTGAAATGTGTGGATCAATGGCTAAAAATCATATCTTGTTGTCCCCTTTGCAAACAAGGACTAGAGAAGTAG 1068 0.4213 MFPMNSRCFLPQESLFINSSSMASFSSNSAPPAAAEDSRVNSTRNRPLPRASPPSFLVQMAMRVSRARWFTFLRRVFHYQNGSRSNLGSNPFNTRTWMMMEFIALMVQIITITFTLAISKSERPVWPMRIWSAGYDIGCVLNLLLLYGRYRQICASQGDVLSFSDIEQQRSNEETSVYRISHLMNKCRTSLDLFFAIWFVMGNVWVFDSRFGSFNQAPKLHVLCITLLAWNAICYSFPFLLFLLLCCCVPLTSRLLGYNMNMGSSDKGASDDQISQLPSWRYKESHNKLEFGNKDSESSEKLINEDSECCICLAKYKEKEEVRQLPCSHVFHLKCVDQWLKIISCCPLCKQGLEK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272064g00007 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 354 IPR013083 -
Stsc272064g00007 355 Pfam Ring finger domain 308 350 IPR001841 -
Stsc272064g00007 355 SMART ring_2 309 349 IPR001841 -
Stsc272064g00007 355 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 33 352 - -
Stsc272064g00007 355 SUPERFAMILY RING/U-box 300 353 - -
Stsc272064g00007 355 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Stsc272064g00007 355 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272064g00007 Stsc-Chr272064 24402 27468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272064g00007 56 353 C3H Transcription Factor Family AT4G26580 72.910 1.53e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272064g00007 - - adu:107496222 625.165