Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272064g00006 ATGGCTTCATTTTCTTCAAATTCTGCACCACCAGCAGCAGCAGAAGATAGCAGGGTGAATAGTACCCGAAACCGGCCTCTTCCACGTGCCTCCCCGCCTTCATTTTTGGTTCAGATGGCGATGAGGGTATCCAGAGCAAGATGGTTTACCTTCTTGAGAAGAGTGTTCCATTACCAAAATGGATCAAGGTCAAACCTTGGCTCTAATCCTTTCAATACTAGAACATGGATGATGATGGAGTTTATAGCTTTAATGGTTCAGATAATCACAATAACATTCACTTTGGCTATTTCGAAAAGCGAGAGGCCTGTTTGGCCTATGAGGATTTGGTCAGCTGGTTATGATATTGGATGTGTTCTTAATCTGCTGCTACTTTATGGTCGGTACCGGCAAATTTGTGCGAGTCAAGGAGATGTTCTCAGCTTTTCTGATATTGAACAACAGAGAAGCAATGAAGAAACCAGCGTATACAGGATTTCCCATTTGATGAACAAGTGCAGGACATCACTTGATCTTTTCTTTGCAATTTGGTTTGTGATGGGAAATGTTTGGGTCTTCGACTCGCGTTTCGGATCCTTTAACCAAGCTCCAAAGCTCCATGTTCTTTGCATCACACTGCTTGCATGGAATGCAATATGTTACTCTTTCCCTTTCCTTCTGTTTCTGCTCTTGTGTTGCTGTGTGCCTCTAACTAGCCGGCTCCTCGGCTACAACATGAATATGGGATCTTCTGACAAAGGAGCATCTGATGATCAAATCTCACAACTTCCAAGTTGGAGATATAAAGAATCACATAACAAGTTAGAGTTCGGCAACAAGGATTCCGAAAGCAGTGAGAAATTGATCAATGAGGACTCAGAATGCTGTATTTGCTTGGCAAAGTACAAAGAGAAAGAAGAAGTTAGACAATTGCCATGTTCCCATGTATTCCACCTGAAATGTGTGGATCAATGGCTAAAAATCATATCTTGTTGTCCCCTTTGCAAACAAGGACTAGAGAAGTAG 1005 0.4219 MASFSSNSAPPAAAEDSRVNSTRNRPLPRASPPSFLVQMAMRVSRARWFTFLRRVFHYQNGSRSNLGSNPFNTRTWMMMEFIALMVQIITITFTLAISKSERPVWPMRIWSAGYDIGCVLNLLLLYGRYRQICASQGDVLSFSDIEQQRSNEETSVYRISHLMNKCRTSLDLFFAIWFVMGNVWVFDSRFGSFNQAPKLHVLCITLLAWNAICYSFPFLLFLLLCCCVPLTSRLLGYNMNMGSSDKGASDDQISQLPSWRYKESHNKLEFGNKDSESSEKLINEDSECCICLAKYKEKEEVRQLPCSHVFHLKCVDQWLKIISCCPLCKQGLEK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272064g00006 334 SMART ring_2 288 328 IPR001841 -
Stsc272064g00006 334 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
Stsc272064g00006 334 Pfam RING-like zinc finger 287 315 IPR001841 -
Stsc272064g00006 334 MobiDBLite consensus disorder prediction 1 27 - -
Stsc272064g00006 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 333 IPR013083 -
Stsc272064g00006 334 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 22 331 - -
Stsc272064g00006 334 SUPERFAMILY RING/U-box 279 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272064g00006 Stsc-Chr272064 24402 27468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272064g00006 35 332 C3H Transcription Factor Family AT4G26580 72.910 1.16e-151 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272064g00006 - - adu:107496222 609.372