Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272063g00006 ATGAACGAGAAGGCCAACGTAACCAAGGAGCTCAACGCCAAGCACAAGAAGATACTGGAAGCACTTCTTAAATTGCCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAGGGTCCAAGATGGGCTAGTGTAAATCTCGGCATCTTCATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGAGTACATATATCAAAGGTTCGTTCTGCAACTCTGGACACTTGGCTTCCCGAGCAAGTTGCATTCATTCAGTCCATGGGGAACGAGAGAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAACTATGATAGAGTTGGAATCGAGAATTTCATTCGTGCAAAGTATGAAGAGAAAAGATGGGCTGCAAGGGATGGGAAACCAAAATCACCTTCTAGACTGCGAGAAGAGAAAAGTTCTTCACATTTGCAGAGACCTGTGGAAAGAAGTGGGCATGGTTATGCAGCTGCTTCTGATAATACAGTTGAGGAAAGGAAGAAAAACCAACCTTCAAAACCAAGTCCTGCTGCAAGAATTAGTATTCTTACTCCTCCCAAAGTATCTGAACATGTTACTCCTGTTAGCAAACCTCAGCATGTTGAGAAAGCAGAACCAGCAGCACCTCAACCACAAGTTGAAACTTCAAAGCAGGTTACAGACACAGCTCAAAATATTCCTGCAAAAGTTGATTATGCTACAGATCTTTTCAACCTGTTATCAATGGATGGCCCTAGTGAAAATGGCTCAGAGGCAACTGGTACTACCACTGAAGATAATAACTGGGCAGGTTTCCAATCTGCTCCAGTGGCTTCAACAACTGAGAAGGCCAGTCCTCCAAAAGCAGTTGAGAGTACACCCCAGCCTGCATCTGGAATTGAGGATCTCTTTAAAGATTCATCTTCTGTGACACCAAGCTTAGCCGCAGAGAAACCCCAGAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGACCAATATTGTGTCTCCATTCGCTATGCATCAACAGCAGCTTGCCATGTTAGCACAGCAACAGTCTCTTCTAATGGCTACTGCAGCTAAATCAAATGTTGGAGATCCCAAGTACCCTGCTGGTATACAGCAACCTATGCCCAATGTTCCTATTCAGAATTGGCCAGCTGCTGGTTACTCAATTCCTGGAGTCATGCCCATGGGTGGTCAAGGAGATTTGCAGAAACTTATGCAGAATCTTGATGGTTGA 1227 0.4401 MNEKANVTKELNAKHKKILEALLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPPNYDRVGIENFIRAKYEEKRWAARDGKPKSPSRLREEKSSSHLQRPVERSGHGYAAASDNTVEERKKNQPSKPSPAARISILTPPKVSEHVTPVSKPQHVEKAEPAAPQPQVETSKQVTDTAQNIPAKVDYATDLFNLLSMDGPSENGSEATGTTTEDNNWAGFQSAPVASTTEKASPPKAVESTPQPASGIEDLFKDSSSVTPSLAAEKPQKDVKNDIMSLFEKTNIVSPFAMHQQQLAMLAQQQSLLMATAAKSNVGDPKYPAGIQQPMPNVPIQNWPAAGYSIPGVMPMGGQGDLQKLMQNLDG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272063g00006 408 CDD ArfGap 19 117 - -
Stsc272063g00006 408 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Stsc272063g00006 408 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 405 IPR044520 GO:0005096
Stsc272063g00006 408 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Stsc272063g00006 408 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Stsc272063g00006 408 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Stsc272063g00006 408 MobiDBLite consensus disorder prediction 122 222 - -
Stsc272063g00006 408 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Stsc272063g00006 408 MobiDBLite consensus disorder prediction 243 285 - -
Stsc272063g00006 408 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Stsc272063g00006 408 MobiDBLite consensus disorder prediction 122 146 - -
Stsc272063g00006 408 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Stsc272063g00006 408 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Stsc272063g00006 408 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Stsc272063g00006 408 MobiDBLite consensus disorder prediction 243 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272063g00006 Stsc-Chr272063 53336 58740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272063g00006 16 118 C2H2 Transcription Factor Family AT4G05330 51.351 5.98e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272063g00006 K12486 - gmx:100780452 634.024