Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272063g00003 ATGTTGATGATGAAACTTGTTCTCAAGTGGGTTTCTTCTGTTTGTGTTGTTTTGCTTCTGTTCTTGTTGAATGGAGCATTTTCAGCATCATCTTCATCATACACTCCTCCTGACAATTATCTCATTGCTTGTGGTGCCTCAAAAAGCATCTCCTTCCAAGGCCGAACCTTTGTTCCTGATTCACAGCATTCTTCACTAGTGTTCAAAACTGGGGATTCTATTGTTGCTGCTAGTTCCAATTCTAGTACTGCACCATCCCCAATTTACCAATCAGCTAGGATCTTCACTGATACAGCTACATATAGATTTGAAATTGCGCAAGAGGGTCGGCACTGGATCCGGCTTTACTTTTCTCCTGTTCGGAACTCCGGTCACGATTTGAATTCTGCTTCTGTGACAGTTGTTACTGATAATTTTGTTCTCTTGAGCAATTTCACATTTAGGAGCTACAATGGTTCTTATATGTTTAGGGAGTATGCCATCAATGTTACCTCTGATACCTTGACTATGACTTTTATCCCTTCTAATGGTTCAATTGCCTTTGTCAATGCAATTGAAGTTGTGTCTATGCCTGATGATTTGTTTGTTGATCAGGCATTGGCCCTTAACCCCTCAGCCCCATTCAGCGGCCTCTCTGAACTCGCTTTCGAAACAGTTTACCGGGTGAACATAGGAGGTCCCTTCCTTACTGCCCAAAATGACACCCTTGGAAGGACTTGGGAGAATGATCTGAAGTACCTCCATGTGAACAGCTCAGTCGCTAACGTGTCGGTTGATCCTTCTACCATCAAGTATCCGGCAGGTGTGACGCCTCAGACAGCTCCGAATTGGGTCTATGCCACAGCTGAGGCAATGGGGGATCCAAATGTGGCCAATTCCAATTTCAACATTACTTGGGTCTTCCCTGTGGATCCAAGCTTCTCCTATTTTATCCGGGCACATTTTTGTGATATCATGAGTACGTCATTGAACACTTTGGTGTTCAATATGTTCATAAATTCCGACATAGCTATTGGAAGCCTTGATCTCTCATCCATAACCAATGACTTGGATGTGCCTTACTTTAAGGACTTTGTCTCCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGACCTCACTAATGCTACTATGAATGGATTGGAGATAATGAAAATCAGCAATGCATTGAGGAGCTTGGATGGGCTTTCTTCGGTTGAGAGCCTCCTTCCTAGTTCACAATCAAAGAAGAACAAGATAGGAATTATAGTTGGCTGTGCTTTTGGGGCTTTAGCAGCCATAATGTTTGTTGGATTGTGTTGTTATTGCTGCTTGTTACGATTCAAGTCAAAGGATACTCAACAAGGTGGCCATCCATGGCTGCCTTTGCCCTTGTATGGAAACTCTCTGACCATGACAAAAATGTCAACTATCTCGCAAAAGAGCGGAACTGCAAGTTGCATATCTTTGGCTTCCTCAAATCTTGGACGCTTGTTCACTTTCCAAGAAATTCTAGACGCAACCAACAAGTTTGATGAGAAGTTGCTTCTTGGTGTTGGCGGTTTTGGTAGAGTTTACAAGGGAACACTTGATGACGGAACCAATGTAGCTGTTAAGAGAGGCAATCCTAGATCTGAACAAGGTATTGCTGAATTCCGAACAGAAATCGAAATGTTATCCAAGCTTCGCCATCGTCATCTCGTGTCTCTTATCGGTTATTGTGATGAGAGGTCAGAGATGATTCTTGTCTATGAATACATGGCTAATGGACCCCTCAGGAGTCACTTGTATGGAACTGACCTGCCACCTCTATCCTGGAAGCAGAGGCTTGAAATCTGCATTGGAGCAGCAAGAGGCCTCCATTACCTCCACACAGGTGCATCTCAAAGCATAATTCACAGGGATGTAAAGACAACAAACATCCTCTTAGATGATATCTTCGTCGCCAAGGTTGCTGATTTCGGCCTCTCCAAAACTGGTCCTGCTCTTGATCAAACTCATGTGAGCACCGCCGTCAAGGGCAGTTTCGGTTATCTTGATCCAGAATACTTCAGGAGACAACAGCTTACAGAGAAATCTGATGTCTATTCTTTTGGAGTAGTTCTAATGGAAGTGTTATGCACAAGGCCGGCTTTGAACCCTGTCCTTCCAAGGGAGCAGGTTAATATAGCTGAGTGGGCAATGACTTGGCAGAAAAAGGGTATGCTTGATCAAATCATGGATCAAAATCTAGTGGGGAAAGTCAACCCTGCTTCTCTCAAGAAGTTTGGGGAGACGGCCGAGAAGTGTTTGGCCGAGTACGGCGTGGATAGGCCGTCTATGGGAGATGTCTTGTGGAACCTTGAATATGCTTTGCAACTCCAAGAGACCTCGACGGCGCTTATGGAACCCGAAGACAATAGCACTAACCACATTACCGGAATTCAGTTGACTCGGCTGGAACAATTTGACAACAGTGTGAGCATGATTGATGGGGGCATTTCTGGCACAGATGATGATGCAGAAGATGCTGCAACAAGTGCAGTGTTCTCGCAGTTGGTAAATCCTCGTGGAAGATGA 2562 0.4356 MLMMKLVLKWVSSVCVVLLLFLLNGAFSASSSSYTPPDNYLIACGASKSISFQGRTFVPDSQHSSLVFKTGDSIVAASSNSSTAPSPIYQSARIFTDTATYRFEIAQEGRHWIRLYFSPVRNSGHDLNSASVTVVTDNFVLLSNFTFRSYNGSYMFREYAINVTSDTLTMTFIPSNGSIAFVNAIEVVSMPDDLFVDQALALNPSAPFSGLSELAFETVYRVNIGGPFLTAQNDTLGRTWENDLKYLHVNSSVANVSVDPSTIKYPAGVTPQTAPNWVYATAEAMGDPNVANSNFNITWVFPVDPSFSYFIRAHFCDIMSTSLNTLVFNMFINSDIAIGSLDLSSITNDLDVPYFKDFVSNXXXXXXXXXXXXXXXXXADLTNATMNGLEIMKISNALRSLDGLSSVESLLPSSQSKKNKIGIIVGCAFGALAAIMFVGLCCYCCLLRFKSKDTQQGGHPWLPLPLYGNSLTMTKMSTISQKSGTASCISLASSNLGRLFTFQEILDATNKFDEKLLLGVGGFGRVYKGTLDDGTNVAVKRGNPRSEQGIAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDDIFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETSTALMEPEDNSTNHITGIQLTRLEQFDNSVSMIDGGISGTDDDAEDAATSAVFSQLVNPRGR 853
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc272063g00003 853 Pfam Protein tyrosine and serine/threonine kinase 517 778 IPR001245 GO:0004672|GO:0006468
Stsc272063g00003 853 Gene3D Transferase(Phosphotransferase) domain 1 588 807 - -
Stsc272063g00003 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Stsc272063g00003 853 SMART serkin_6 512 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272063g00003 853 SUPERFAMILY Protein kinase-like (PK-like) 491 783 IPR011009 -
Stsc272063g00003 853 FunFam Receptor-like protein kinase FERONIA 588 804 - -
Stsc272063g00003 853 FunFam receptor-like protein kinase FERONIA 474 587 - -
Stsc272063g00003 853 PANTHER OS07G0166700 PROTEIN 498 789 IPR045272 GO:0004714|GO:0006468
Stsc272063g00003 853 FunFam Receptor-like protein kinase FERONIA 215 396 - -
Stsc272063g00003 853 FunFam Putative receptor-like protein kinase 39 191 - -
Stsc272063g00003 853 CDD STKc_IRAK 518 783 - -
Stsc272063g00003 853 Pfam Malectin-like domain 42 393 IPR024788 -
Stsc272063g00003 853 ProSiteProfiles Protein kinase domain profile. 512 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272063g00003 853 Gene3D - 214 395 - -
Stsc272063g00003 853 Gene3D - 39 191 - -
Stsc272063g00003 853 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Stsc272063g00003 853 Coils Coil 379 384 - -
Stsc272063g00003 853 Gene3D Phosphorylase Kinase; domain 1 472 587 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc272063g00003 Stsc-Chr272063 40469 43489 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272063g00003 25 803 Receptor kinase-like Gene Family AT2G21480 52.665 0.0 815
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc272063g00003 Malectin_like 7.5e-35 CL0202
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272063g00003 - - gmx:100809700 1382.47