LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272063g00003	ATGTTGATGATGAAACTTGTTCTCAAGTGGGTTTCTTCTGTTTGTGTTGTTTTGCTTCTGTTCTTGTTGAATGGAGCATTTTCAGCATCATCTTCATCATACACTCCTCCTGACAATTATCTCATTGCTTGTGGTGCCTCAAAAAGCATCTCCTTCCAAGGCCGAACCTTTGTTCCTGATTCACAGCATTCTTCACTAGTGTTCAAAACTGGGGATTCTATTGTTGCTGCTAGTTCCAATTCTAGTACTGCACCATCCCCAATTTACCAATCAGCTAGGATCTTCACTGATACAGCTACATATAGATTTGAAATTGCGCAAGAGGGTCGGCACTGGATCCGGCTTTACTTTTCTCCTGTTCGGAACTCCGGTCACGATTTGAATTCTGCTTCTGTGACAGTTGTTACTGATAATTTTGTTCTCTTGAGCAATTTCACATTTAGGAGCTACAATGGTTCTTATATGTTTAGGGAGTATGCCATCAATGTTACCTCTGATACCTTGACTATGACTTTTATCCCTTCTAATGGTTCAATTGCCTTTGTCAATGCAATTGAAGTTGTGTCTATGCCTGATGATTTGTTTGTTGATCAGGCATTGGCCCTTAACCCCTCAGCCCCATTCAGCGGCCTCTCTGAACTCGCTTTCGAAACAGTTTACCGGGTGAACATAGGAGGTCCCTTCCTTACTGCCCAAAATGACACCCTTGGAAGGACTTGGGAGAATGATCTGAAGTACCTCCATGTGAACAGCTCAGTCGCTAACGTGTCGGTTGATCCTTCTACCATCAAGTATCCGGCAGGTGTGACGCCTCAGACAGCTCCGAATTGGGTCTATGCCACAGCTGAGGCAATGGGGGATCCAAATGTGGCCAATTCCAATTTCAACATTACTTGGGTCTTCCCTGTGGATCCAAGCTTCTCCTATTTTATCCGGGCACATTTTTGTGATATCATGAGTACGTCATTGAACACTTTGGTGTTCAATATGTTCATAAATTCCGACATAGCTATTGGAAGCCTTGATCTCTCATCCATAACCAATGACTTGGATGTGCCTTACTTTAAGGACTTTGTCTCCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGACCTCACTAATGCTACTATGAATGGATTGGAGATAATGAAAATCAGCAATGCATTGAGGAGCTTGGATGGGCTTTCTTCGGTTGAGAGCCTCCTTCCTAGTTCACAATCAAAGAAGAACAAGATAGGAATTATAGTTGGCTGTGCTTTTGGGGCTTTAGCAGCCATAATGTTTGTTGGATTGTGTTGTTATTGCTGCTTGTTACGATTCAAGTCAAAGGATACTCAACAAGGTGGCCATCCATGGCTGCCTTTGCCCTTGTATGGAAACTCTCTGACCATGACAAAAATGTCAACTATCTCGCAAAAGAGCGGAACTGCAAGTTGCATATCTTTGGCTTCCTCAAATCTTGGACGCTTGTTCACTTTCCAAGAAATTCTAGACGCAACCAACAAGTTTGATGAGAAGTTGCTTCTTGGTGTTGGCGGTTTTGGTAGAGTTTACAAGGGAACACTTGATGACGGAACCAATGTAGCTGTTAAGAGAGGCAATCCTAGATCTGAACAAGGTATTGCTGAATTCCGAACAGAAATCGAAATGTTATCCAAGCTTCGCCATCGTCATCTCGTGTCTCTTATCGGTTATTGTGATGAGAGGTCAGAGATGATTCTTGTCTATGAATACATGGCTAATGGACCCCTCAGGAGTCACTTGTATGGAACTGACCTGCCACCTCTATCCTGGAAGCAGAGGCTTGAAATCTGCATTGGAGCAGCAAGAGGCCTCCATTACCTCCACACAGGTGCATCTCAAAGCATAATTCACAGGGATGTAAAGACAACAAACATCCTCTTAGATGATATCTTCGTCGCCAAGGTTGCTGATTTCGGCCTCTCCAAAACTGGTCCTGCTCTTGATCAAACTCATGTGAGCACCGCCGTCAAGGGCAGTTTCGGTTATCTTGATCCAGAATACTTCAGGAGACAACAGCTTACAGAGAAATCTGATGTCTATTCTTTTGGAGTAGTTCTAATGGAAGTGTTATGCACAAGGCCGGCTTTGAACCCTGTCCTTCCAAGGGAGCAGGTTAATATAGCTGAGTGGGCAATGACTTGGCAGAAAAAGGGTATGCTTGATCAAATCATGGATCAAAATCTAGTGGGGAAAGTCAACCCTGCTTCTCTCAAGAAGTTTGGGGAGACGGCCGAGAAGTGTTTGGCCGAGTACGGCGTGGATAGGCCGTCTATGGGAGATGTCTTGTGGAACCTTGAATATGCTTTGCAACTCCAAGAGACCTCGACGGCGCTTATGGAACCCGAAGACAATAGCACTAACCACATTACCGGAATTCAGTTGACTCGGCTGGAACAATTTGACAACAGTGTGAGCATGATTGATGGGGGCATTTCTGGCACAGATGATGATGCAGAAGATGCTGCAACAAGTGCAGTGTTCTCGCAGTTGGTAAATCCTCGTGGAAGATGA	2562	0.4356	MLMMKLVLKWVSSVCVVLLLFLLNGAFSASSSSYTPPDNYLIACGASKSISFQGRTFVPDSQHSSLVFKTGDSIVAASSNSSTAPSPIYQSARIFTDTATYRFEIAQEGRHWIRLYFSPVRNSGHDLNSASVTVVTDNFVLLSNFTFRSYNGSYMFREYAINVTSDTLTMTFIPSNGSIAFVNAIEVVSMPDDLFVDQALALNPSAPFSGLSELAFETVYRVNIGGPFLTAQNDTLGRTWENDLKYLHVNSSVANVSVDPSTIKYPAGVTPQTAPNWVYATAEAMGDPNVANSNFNITWVFPVDPSFSYFIRAHFCDIMSTSLNTLVFNMFINSDIAIGSLDLSSITNDLDVPYFKDFVSNXXXXXXXXXXXXXXXXXADLTNATMNGLEIMKISNALRSLDGLSSVESLLPSSQSKKNKIGIIVGCAFGALAAIMFVGLCCYCCLLRFKSKDTQQGGHPWLPLPLYGNSLTMTKMSTISQKSGTASCISLASSNLGRLFTFQEILDATNKFDEKLLLGVGGFGRVYKGTLDDGTNVAVKRGNPRSEQGIAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDDIFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETSTALMEPEDNSTNHITGIQLTRLEQFDNSVSMIDGGISGTDDDAEDAATSAVFSQLVNPRGR	853

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272063g00003	853	Pfam	Protein tyrosine and serine/threonine kinase	517	778	IPR001245	GO:0004672\|GO:0006468
	Stsc272063g00003	853	Gene3D	Transferase(Phosphotransferase) domain 1	588	807	-	-
	Stsc272063g00003	853	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	632	644	IPR008271	GO:0004672\|GO:0006468
	Stsc272063g00003	853	SMART	serkin_6	512	785	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272063g00003	853	SUPERFAMILY	Protein kinase-like (PK-like)	491	783	IPR011009	-
	Stsc272063g00003	853	FunFam	Receptor-like protein kinase FERONIA	588	804	-	-
	Stsc272063g00003	853	FunFam	receptor-like protein kinase FERONIA	474	587	-	-
	Stsc272063g00003	853	PANTHER	OS07G0166700 PROTEIN	498	789	IPR045272	GO:0004714\|GO:0006468
	Stsc272063g00003	853	FunFam	Receptor-like protein kinase FERONIA	215	396	-	-
	Stsc272063g00003	853	FunFam	Putative receptor-like protein kinase	39	191	-	-
	Stsc272063g00003	853	CDD	STKc_IRAK	518	783	-	-
	Stsc272063g00003	853	Pfam	Malectin-like domain	42	393	IPR024788	-
	Stsc272063g00003	853	ProSiteProfiles	Protein kinase domain profile.	512	785	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272063g00003	853	Gene3D	-	214	395	-	-
	Stsc272063g00003	853	Gene3D	-	39	191	-	-
	Stsc272063g00003	853	ProSitePatterns	Protein kinases ATP-binding region signature.	518	540	IPR017441	GO:0005524
	Stsc272063g00003	853	Coils	Coil	379	384	-	-
	Stsc272063g00003	853	Gene3D	Phosphorylase Kinase; domain 1	472	587	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272063g00003	Stsc-Chr272063	40469	43489	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272063g00003	25	803	Receptor kinase-like Gene Family	AT2G21480	52.665	0.0	815

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Stsc272063g00003		Malectin_like	7.5e-35	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272063g00003	-		-	gmx:100809700	1382.47