Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272062g00011 ATGGCTTTGGAGGCTCTGAATTCTCCTACAGCTGGGGTTACAGCTCCTTTCTTCCCTACGTTCCAAGATCATCAAGAAGATGATGAAGAACTTCATCACCTTCGTGAGCCATGGGCAAAGAGGAAGCGATCAAAACGACCGCGTTTCGAGAATCCTCCCACCGAAGAAGAATACCTGGCTCTCTGCCTCATCATGTTAGCTCACAGCGGCAGCAACAACAACAACAAGAAGGTCGTCACTGATACCACTCTCAAGAACGAAAAAACAGAGTCTTCATCTTCACAACAACCGCCACAAGAAGCCTCATCCTCGCCGCCTATGAAGCTGAGTCACAGGTGCACCGTCTGTAACAAGGCCTTCCCTTCTTACCAAGCACTCGGCGGACACAAGGCCAGCCACCGCAAATCTTCCACCACTTCTGAAAACAACAACAACAACAGCAGCACCGCCACGGCACCTGTAGTGGTCAACAACAACGAAAACGTGTCATCAGGCCCAAGGATGCACGAGTGTTCCATATGTCACAAGTCTTTCCCTACCGGTCAGGCTTTGGGCGGCCACAAACGCTGCCACTACGAAGGTGGCAACAACAACAACAGCAGCGCCGTCGCAACTTCAGAAGGCGGCGCCTCATCCCACAGCTTCCGTGGCTTTGACCTCAACCTGCCTGCTCCCCTGGCCGAGTACTGGTCGCCGGCCGGGCTTGACGTCACTACCGAGCCCAAGAAAAAGATGAAGAACTCCAAGGTTGAGGAGCAAGAAGTGGAAAGCCCTCTGCCGGTAGCCGCCGCGAAGAGGGCGCGCTTGTTTGAAGACGCTCATCATCATCAGAATTAA 837 0.5329 MALEALNSPTAGVTAPFFPTFQDHQEDDEELHHLREPWAKRKRSKRPRFENPPTEEEYLALCLIMLAHSGSNNNNKKVVTDTTLKNEKTESSSSQQPPQEASSSPPMKLSHRCTVCNKAFPSYQALGGHKASHRKSSTTSENNNNNSSTATAPVVVNNNENVSSGPRMHECSICHKSFPTGQALGGHKRCHYEGGNNNNSSAVATSEGGASSHSFRGFDLNLPAPLAEYWSPAGLDVTTEPKKKMKNSKVEEQEVESPLPVAAAKRARLFEDAHHHQN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272062g00011 278 Gene3D Classic Zinc Finger 109 191 - -
Stsc272062g00011 278 MobiDBLite consensus disorder prediction 131 153 - -
Stsc272062g00011 278 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Stsc272062g00011 278 MobiDBLite consensus disorder prediction 126 153 - -
Stsc272062g00011 278 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 41 224 IPR044653 GO:0003700
Stsc272062g00011 278 MobiDBLite consensus disorder prediction 1 53 - -
Stsc272062g00011 278 SMART c2h2final6 111 133 IPR013087 -
Stsc272062g00011 278 SMART c2h2final6 169 191 IPR013087 -
Stsc272062g00011 278 Pfam C2H2-type zinc finger 169 192 - -
Stsc272062g00011 278 Pfam C2H2-type zinc finger 111 135 - -
Stsc272062g00011 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Stsc272062g00011 278 MobiDBLite consensus disorder prediction 22 37 - -
Stsc272062g00011 278 MobiDBLite consensus disorder prediction 238 261 - -
Stsc272062g00011 278 MobiDBLite consensus disorder prediction 84 110 - -
Stsc272062g00011 278 SUPERFAMILY beta-beta-alpha zinc fingers 111 191 IPR036236 -
Stsc272062g00011 278 MobiDBLite consensus disorder prediction 239 253 - -
Stsc272062g00011 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 191 IPR013087 -
Stsc272062g00011 278 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272062g00011 Stsc-Chr272062 73197 74033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272062g00011 1 241 C2H2 Transcription Factor Family AT1G27730 44.048 7.00e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272062g00011 zf-C2H2_6 2.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272062g00011 - - aip:107618861 307.76