Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272062g00008 ATGAGCTGCAACGGTTGCCGTGTGCTACGAAAAGGTTGCAACGAAGAGTGCATGCTGAGACATTGCTTGACATGGATAGAGAACAATCCAGAAGCACAGGGTTACGCCACCCTCTTCGTAGCCAAGTTCTTCGGCCGCGCCAACCTCATGTCTTTCCTTTCCTTCGTTCCCACTAACCACAGATCCGCATTGTTTCAGTCACTTCTGTATGAGGCAGTGGGGCGTACCATAAACCCCGTCGATGGGGCAGTGGGCCTGCTCTCCACTGGCAACTGGCATCTCTGTCAGTTGGCTGTCGAGAAAGTCCTCCGAGGTGGAGCCGCTGCCTTGATGGACACTACTAGTCATCACCACCAAGCTGTAGTGATGAAGAGAAAGCAAGTTAGTTTGGATGATTATTTCTTGAAGGAAGCAGAATCAGATCACCATCTCCATCATCAATCAAAGAAGCAACAACGCGCGCGTTCACCTCCCAGCAACCAGGAATCCGATACCACCACCTTCACAACTACGACTCATCATTCGCCTTCTCAAACTACTGAAACCAAGCTCCTTACGCTTTTCTTCTGA 570 0.5035 MSCNGCRVLRKGCNEECMLRHCLTWIENNPEAQGYATLFVAKFFGRANLMSFLSFVPTNHRSALFQSLLYEAVGRTINPVDGAVGLLSTGNWHLCQLAVEKVLRGGAAALMDTTSHHHQAVVMKRKQVSLDDYFLKEAESDHHLHHQSKKQQRARSPPSNQESDTTTFTTTTHHSPSQTTETKLLTLFF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272062g00008 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 185 - -
Stsc272062g00008 189 MobiDBLite consensus disorder prediction 153 181 - -
Stsc272062g00008 189 ProSiteProfiles LOB domain profile. 1 108 IPR004883 -
Stsc272062g00008 189 MobiDBLite consensus disorder prediction 141 181 - -
Stsc272062g00008 189 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272062g00008 Stsc-Chr272062 48061 49142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272062g00008 1 107 AS2 family AT3G49940 74.766 2.05e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc272062g00008 LOB 2.5e-24 No_clan