Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272060g00007 ATGGCTGGGTTGGCACCACAAGGATCACAATTTGATGCTCGTCAATTTGATGCTAAGATGGATGAGTTACTTGGGGCTAATGGGGAGGACTTCTTTACATCTTATGATGAAGTTTATGATAGCTTTGATGCTATGGGATTGCAGGAGAATCTTCTAAGGGGTATTTATGCATATGGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGAGGGATTGTGCCTTTCATCAAGGGACTTGATGTGATTCAGCAAGCACAATCTGGAACTGGAAAAACTGCTACTTTTTGCTCTGGTATCTTGCAGCAGCTTGATTACACCTTACTTGAATGCCAGGCTCTAGTTCTCGCTCCCACTCGCGAACTTGCACAACAAATTGAGAAGGTCATGAGAGCACTAGGTGACTATCTTGGGGTTAAGGTTCATACTTGTGTTGGTGGCACCCTTGTTCGTGAAGACAAACGGATCCTCGAAAGCGGGGTTCATATCGTGGTTGGTACTCCTGGTCGTGTATTTGACATGCTGCATAGACAGTTTTTGCGCCCTGATAGCATTAGAATGTTTGTGTTAGATGAGGCAGATGAGATGCTCTCTAAAGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTTCTGCCACCAAGGATACAGGTTGGGCTTTTCTCTGCCACAATGCCTCCAGAAGCCTTGGAGATTACAAGGAAATTTATGAATAGGCCTGTGAGGATTCTTGTGAAACGTGATGAGCTTACCTTGGAGGGTATCAAGCAATTCTTTGTGAATGTTGAGAAGGAGGAATGGAAGCTTGAGACACTTTGTGATCTTTATGNNNNNNNNNNGGCCATTACTCAGAGTGTTATCTTTGTCAACACCAGACGCAAGGTAGATTGGTTGACAGACAGGATGCGCGGCCGTGATCACACTGTCTCAGCCACCCATGGAGATATGGACCAAAATGCAAGAGATATCATCATGAGGGAATTCCGTTCCGGTTCCTCTCGGGTTCTCATTACCACAGATCTTTTGGCCCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTGATCAATTATGACCTTCCCACTCAGCCAGAGAGCTATCTCCATAGAATTGGCCGTAGCGGACGGTTTGGAAGAAAGGGTGTTGCCATCAATTTCGTGACGAGGGACGATGAAAGGATGATGCTTGACATACAAAAGTTTTACAATGTGGTGATTGAGGAGCTGCCAGAAAATGTTGCTGATCTCCTTTGA 1245 0.4458 MAGLAPQGSQFDARQFDAKMDELLGANGEDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDYTLLECQALVLAPTRELAQQIEKVMRALGDYLGVKVHTCVGGTLVREDKRILESGVHIVVGTPGRVFDMLHRQFLRPDSIRMFVLDEADEMLSKGFKDQIYDIFQLLPPRIQVGLFSATMPPEALEITRKFMNRPVRILVKRDELTLEGIKQFFVNVEKEEWKLETLCDLYXXXXAITQSVIFVNTRRKVDWLTDRMRGRDHTVSATHGDMDQNARDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPESYLHRIGRSGRFGRKGVAINFVTRDDERMMLDIQKFYNVVIEELPENVADLL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272060g00007 414 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Stsc272060g00007 414 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Stsc272060g00007 414 CDD SF2_C_DEAD 253 384 - -
Stsc272060g00007 414 SMART helicmild6 294 375 IPR001650 -
Stsc272060g00007 414 Pfam Helicase conserved C-terminal domain 266 375 IPR001650 -
Stsc272060g00007 414 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 414 IPR001650 -
Stsc272060g00007 414 SMART ultradead3 59 256 IPR014001 -
Stsc272060g00007 414 Gene3D - 30 248 IPR027417 -
Stsc272060g00007 414 FunFam Eukaryotic initiation factor 4A-III 248 414 - -
Stsc272060g00007 414 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Stsc272060g00007 414 Gene3D - 249 414 IPR027417 -
Stsc272060g00007 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 395 IPR027417 -
Stsc272060g00007 414 CDD DEADc_EIF4A 44 242 - -
Stsc272060g00007 414 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Stsc272060g00007 414 PANTHER RNA HELICASE 36 398 - -
Stsc272060g00007 414 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272060g00007 Stsc-Chr272060 42096 44453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272060g00007 1 414 Eukaryotic Initiation Factors Gene Family AT1G72730 84.337 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272060g00007 K03257 - sind:105178418 754.592