Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272060g00005 ATGGTGGCGGTGGACAAAGACAAGAACAGCTCCTACGCATTCCGTTGGGCGGTTAATCATCTTGACAACCCTCTCGTCCTCGCCGTCCATGTCAAACACAAAGATAACATTTGTAATCTTCGCAACGATGTCGTTACTGTTTATGAACCCGACGAAGACGATGTAGCCAATGTGTTCGGCAGCTTACGCGGACTCTGTAATCGCAAAGCTGTGCAAGTAAAAGAAGCGGTAATCCATGAAAGCGATGTTGTGAGAGGAATAGTGGAATTTGCAAGCAAGAATTTCATACACAGCATTGTGGTTGGTGCCGGTGCCAACAAGGGGATGATGAACAGAATATTGAGAGGCCATCAAACGGATGTGCCAACTGCATTGCTTAAATCAGCTCCAGATTTCAGTTCTGTGTATGTCATTTCCAAATGGAAAATTGTCTCAGTTCGATCTGCTACTCGTATTGTGAAACATTCTCCTACACCGCCGAAATCAAGGCAATCGCAATCACAACCACCTCCCTCTTCCAGATCATGGCAATCACCGCCTTCTACTCCTTTAAGACAACCACCGCAATCAAAGTCACCGCCACCACTTATGTACCAGTATCCGCCTCATCCACATAGTGAACCTGACATGGGGCCACCAACAAGAGGATTACCATATCGTGATAGACCAAGGAGTGCAGGAAGTAGTCCATTAGTGGTTACTAGCTTTGAAGAAATACCTCCTCATCTTCGCCATTTCTCAATGGATGATTGTAGAGAATTATCCATGGATAATCAATCTTCTAACTTCAGCTTCTCATCTGAATCATCTTCATTCTCAGCCCCTCCTTCTACTACTAGAGATCTTGATGAAGAAATGAGAAGATTGAAGCAGGAACTGCAGCAAACTATAGACTTGTACAGCACAGCTTGCAAACAAGCCATCTCAGCCAAGAATCAGGCTGAAAAGATGGGGCATCTGAAAATGGAAGAGGAGCGTAGGCTTGAGGCAATTAGGTTGTCTCAAGAGGCAGCTCTTGCCATTGCAGAAAGGGAGAAGGCAAGAGCCATAGCCGCATGGGAAGCGGCCGAGGATGCCAAGAAGAGAGCTGAATTGGAAGCAAAGAGAAGAATGGATGCAGAGTTGAAGGCACAGAAAGAGTCAGAGGAGAAGGAGATGGTGCTATCTGCTTTGGCTCACACCGATATGCGATGCAGAAGATACACCATAGAGGAGATTGAAGAAGCTACAGACAAGTTCAACCCTTCAAGGAAAATTGGAGAAGGTGGATATGGTTCTGTCTTTAAAGGTGAACTTGATCACACTCCTGTTGCAATTAAGGTCTTAAACCCTGAAGCTGCTCAGGGCAGGAAACAGTTCCAACAAGAGGTTGAGGTACTAAGCTGCATAAGACATCCTAATATAGTTCTGCTCCTTGGTGCCTGTCCTGAGTCTGGGTGCTTGGTGTATGAATACATGGACTATGGTACCTTAGAAGATAGATTATTCCGGAAAAATAATTCGCCACCTATGTCATGGAGGCTGAGGTTCCATATAGCTGCTGAGATTGCAACTGCACTTCTTTTCTTGCACCAGGCAAAGCCAGAGCCGATTGTGCATCGCGATCTCAAACCGGCAAACATTCTCTTAGACAGGAGTTTCATCACCAAAATCGCAGACATCGGTCTGGCAAGATTAGTCCCTCAATCCGTTGTGGACAGTGTCACACAATATTACATGACCTCAGCTGCTGGAACATTTTGTTATATTGATCCTGAGTATCAGCAAACTGGAATATTGAGCCCGAAATCGGATGTATATTCTTTGGGAGTAGTACTGCTGCAGATAATCACAGCCAGGCCTGCTATGGGACTTTCTCACCATGTTAAGAGGGCAATCGCAAAGGAAAAATTTGAAGATATGCTTGACCCTGTGGTGCTTGATTGGCCAGTTGAGAAGGCTCTAGAGTTTGCCAAGTTAGCATTGGCCTGTTGTGAGCTCAGGAAGAAGGACAGGCCGAATCTCGCAACTGTTGTGTTGCCTGAGCTTAACCGGCTAAGAGAATTCGGAAGAACCTCAAACAATGCTGTTTAG 2073 0.4559 MVAVDKDKNSSYAFRWAVNHLDNPLVLAVHVKHKDNICNLRNDVVTVYEPDEDDVANVFGSLRGLCNRKAVQVKEAVIHESDVVRGIVEFASKNFIHSIVVGAGANKGMMNRILRGHQTDVPTALLKSAPDFSSVYVISKWKIVSVRSATRIVKHSPTPPKSRQSQSQPPPSSRSWQSPPSTPLRQPPQSKSPPPLMYQYPPHPHSEPDMGPPTRGLPYRDRPRSAGSSPLVVTSFEEIPPHLRHFSMDDCRELSMDNQSSNFSFSSESSSFSAPPSTTRDLDEEMRRLKQELQQTIDLYSTACKQAISAKNQAEKMGHLKMEEERRLEAIRLSQEAALAIAEREKARAIAAWEAAEDAKKRAELEAKRRMDAELKAQKESEEKEMVLSALAHTDMRCRRYTIEEIEEATDKFNPSRKIGEGGYGSVFKGELDHTPVAIKVLNPEAAQGRKQFQQEVEVLSCIRHPNIVLLLGACPESGCLVYEYMDYGTLEDRLFRKNNSPPMSWRLRFHIAAEIATALLFLHQAKPEPIVHRDLKPANILLDRSFITKIADIGLARLVPQSVVDSVTQYYMTSAAGTFCYIDPEYQQTGILSPKSDVYSLGVVLLQIITARPAMGLSHHVKRAIAKEKFEDMLDPVVLDWPVEKALEFAKLALACCELRKKDRPNLATVVLPELNRLREFGRTSNNAV 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272060g00005 690 MobiDBLite consensus disorder prediction 152 231 - -
Stsc272060g00005 690 Coils Coil 279 299 - -
Stsc272060g00005 690 Gene3D Transferase(Phosphotransferase) domain 1 486 688 - -
Stsc272060g00005 690 CDD STKc_IRAK 419 679 - -
Stsc272060g00005 690 Coils Coil 365 385 - -
Stsc272060g00005 690 ProSiteProfiles Protein kinase domain profile. 413 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272060g00005 690 MobiDBLite consensus disorder prediction 173 211 - -
Stsc272060g00005 690 SMART serkin_6 413 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272060g00005 690 ProSitePatterns Protein kinases ATP-binding region signature. 419 440 IPR017441 GO:0005524
Stsc272060g00005 690 MobiDBLite consensus disorder prediction 152 172 - -
Stsc272060g00005 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Stsc272060g00005 690 Gene3D HUPs 1 131 IPR014729 -
Stsc272060g00005 690 MobiDBLite consensus disorder prediction 258 283 - -
Stsc272060g00005 690 MobiDBLite consensus disorder prediction 258 278 - -
Stsc272060g00005 690 CDD STK_N 2 140 - -
Stsc272060g00005 690 Gene3D Phosphorylase Kinase; domain 1 375 485 - -
Stsc272060g00005 690 PANTHER OS02G0152300 PROTEIN 2 684 - -
Stsc272060g00005 690 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 385 485 - -
Stsc272060g00005 690 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 116 - -
Stsc272060g00005 690 SUPERFAMILY Protein kinase-like (PK-like) 396 672 IPR011009 -
Stsc272060g00005 690 Pfam Protein kinase domain 415 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272060g00005 Stsc-Chr272060 22202 25125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272060g00005 75 684 Receptor kinase-like Gene Family AT5G12000 53.485 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc272060g00005 Pkinase 7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272060g00005 - - gmx:100798861 768.074