Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272058g00014 ATGTCCATGGAGACTCGCAGTTTCTCCCTCAAGCTCTGCCTCCCGCCATTTGTAACACCAACTGCAACTGTTTACCATTTCCCTCGCTTAGGTAACCTTAATCGAACCTACCCTGCACCTCAATGCATTCTTCACTCTAACTTGACAACTCCACAACCATCACCACTTATCAACCATTCTCCGACTTTGCGAGATTTATGCCAGCCTCATGTCCCCACCCATCTATTGCAAAGGATGGAAGAGATTGGATTTGTGATGCCTACAGATGTCCAGAGGGAGGCTCTGCCACATCTTTTCTCCGGCCGTGACTGTATACTCCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTTTGATTTATTCCATTATCAACACTTCCAAATCTTCTGTACAAGCGCTTGTTGTCGTCCCCACCCGAGAACTTGGCATGCAAGTTACTAAAGTTGCAAGGATGTTGGCAGCAAAGCCGACTGGAGTTGAGGGGGATCACAAGTCATGTACCATCATGGCTCTCTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACAAATTTTCTTGCTTGAATCTGTGCGGGTGCTGATTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTTAGTTCTCTTCGAACGCTTTTGACTTCGTATTCATCATGCAATAACCGTCAGACAGTCTTTGCAAGTGCATCTATACCACAGCACAGACGATTTCTTCACGATTGTGTGCAGCAAAAATGGACAAAGAGTGATGTGATCCATATACATGTCAGCCCAGTGGAGCCTATGCCATCTCGCCTGTGTCATAGATTTATAATATGCAATAACAAAAGGAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCACCCGATTCTGGCATTATATTTGTTGGTGAACAGTCTGAGAAGTCCAAAAGAGCTGGAAATGCTCCATCGACATACCTTGTCATTGACTTTTTGAAGACATCATATGAAGGGCCTTTAGATATTGTCCTACTCGAGGATGACATGAATTTCAACTCCCGCGCAGTTTCATTGTTGGAGCTTCGAAAAGGAGGTGGATATCTGCTTGTAGCAACGGATATAGCTGCTAGAGGAGTTGACCTTCCTGAAATGTCTCATATCTACAACTTTGACTTGCCAAGGACTGCCATTGATTATCTTCATCGAGCAGGCAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCAGCATTATAGTTCCCGAGGAGAGGTTTGTTCTGCATAAATATGAAAATGAGTTGATGTTTAATTCTGAGGAGCTTATTCCATAA 1392 0.4346 MSMETRSFSLKLCLPPFVTPTATVYHFPRLGNLNRTYPAPQCILHSNLTTPQPSPLINHSPTLRDLCQPHVPTHLLQRMEEIGFVMPTDVQREALPHLFSGRDCILHAQTGSGKTLTYLLLIYSIINTSKSSVQALVVVPTRELGMQVTKVARMLAAKPTGVEGDHKSCTIMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLERQIFLLESVRVLIVDEVDFIFNSSKQVSSLRTLLTSYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRFIICNNKRKLQTLLSLIQSDAPDSGIIFVGEQSEKSKRAGNAPSTYLVIDFLKTSYEGPLDIVLLEDDMNFNSRAVSLLELRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTSIIVPEERFVLHKYENELMFNSEELIP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272058g00014 463 CDD DEADc 75 270 - -
Stsc272058g00014 463 SMART helicmild6 343 427 IPR001650 -
Stsc272058g00014 463 SMART ultradead3 83 293 IPR014001 -
Stsc272058g00014 463 CDD SF2_C_DEAD 296 425 - -
Stsc272058g00014 463 Pfam Helicase conserved C-terminal domain 306 425 IPR001650 -
Stsc272058g00014 463 Gene3D - 291 462 IPR027417 -
Stsc272058g00014 463 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 306 463 IPR001650 -
Stsc272058g00014 463 Gene3D - 62 278 IPR027417 -
Stsc272058g00014 463 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 71 454 - -
Stsc272058g00014 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 429 IPR027417 -
Stsc272058g00014 463 Pfam DEAD/DEAH box helicase 88 261 IPR011545 GO:0003676|GO:0005524
Stsc272058g00014 463 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 95 277 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272058g00014 Stsc-Chr272058 73519 76300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272058g00014 74 446 Eukaryotic Initiation Factors Gene Family AT3G13920 27.559 3.63e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272058g00014 - - ahf:112763379 832.017