Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272058g00013 ATGGCCACTTTCACCTCTTTCACTTCTTCTATTCTGACATCACCTCCTTCACCCGACTTCTCCGATGACGCCTGCAGCATTTGTCTTGAACCATTCTCCTTCGTCGACCCCGCCACTATTACCAGTTGCAAACATGATTATCATCTGCATTGTATTATTGAATGGTCACAGAGGAGCAAAGAGTGCCCAATTTGTTGGCAGTTACTTAGCTTAAAAGACCCCGCCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAGCGCTTAATATCAAGAAATGAACATTCATCTTCATTCACCAGCTCTCCTAGTTCCCTTGAACGACTTAATGATGATCATGATGACCCTTGTTCAGATGACTCTGATCTTGATGAGCAGCTTATGCAGCACCTTGTTACTTCTGCTGCTGCAAGCACAGATTGTCCTGCTGGGGTTCAACCACCATCTCAGGGTGGTGTATCATCATCTTCTGACGTTCAACCTCCAACTTCTGAGACTGAGGTCCCTTTCAAGCCCAGTTTTAGCTGGAAACCTTTTCAGAGTGCAAGGAGAGTGAACACTTCCGAAATGTTCTCCTTCCCAGACTCCATCAAGTCCAAATTTTCTGCTACTTCAGCAAGATATAAGGAATCAATTTCGAAAAGAACTAGAGGCCTTAAAGAGAAGTTGATTGCTCGAAATGCCTCAGTGAAAGAGCTCAGTAAAGGTGTTAAGCGTGAGATGAATGTAGGCATTGCTGGTGTTGCAAAGATGATTGAACGTCTTGATCTTTCTTCGAAACGTATCATCCCCGTCAAAGGGAAGTCTGTCCAACAGAATAATGCTATTGAGCAGCAACAATCTGGAGTTTTTGTTTGTCATATTAGTTCAGACTCTCCATCACTGGTTCCTCCTCCAAATGTTCAGAGTGAATAA 915 0.4404 MATFTSFTSSILTSPPSPDFSDDACSICLEPFSFVDPATITSCKHDYHLHCIIEWSQRSKECPICWQLLSLKDPASQELLAAVEAEKRLISRNEHSSSFTSSPSSLERLNDDHDDPCSDDSDLDEQLMQHLVTSAAASTDCPAGVQPPSQGGVSSSSDVQPPTSETEVPFKPSFSWKPFQSARRVNTSEMFSFPDSIKSKFSATSARYKESISKRTRGLKEKLIARNASVKELSKGVKREMNVGIAGVAKMIERLDLSSKRIIPVKGKSVQQNNAIEQQQSGVFVCHISSDSPSLVPPPNVQSE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272058g00013 304 SUPERFAMILY RING/U-box 20 72 - -
Stsc272058g00013 304 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 74 - -
Stsc272058g00013 304 SMART ring_2 25 65 IPR001841 -
Stsc272058g00013 304 MobiDBLite consensus disorder prediction 138 170 - -
Stsc272058g00013 304 Pfam Ring finger domain 24 65 IPR001841 -
Stsc272058g00013 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 96 IPR013083 -
Stsc272058g00013 304 MobiDBLite consensus disorder prediction 138 172 - -
Stsc272058g00013 304 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Stsc272058g00013 304 MobiDBLite consensus disorder prediction 92 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272058g00013 Stsc-Chr272058 71096 73344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272058g00013 6 65 C3H Transcription Factor Family AT4G00335 37.500 2.11e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272058g00013 K19043 - gmx:100785684 315.079