Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272058g00003 ATGGGAATCTCTTGGAGCAACACCAACAGTAACACTAACAGAAGAAGAAGAAACTCTTACCCACCGCCTCTTCCTCCTCCTTACTATTACTCTTCTGATCCGAACCATCCTCAGCTCCCACCGCCCCCTCCTCCTCCTCAGCCACCGCCTCCTCCGCCGCAAGGCTATTACTTTCCTCCCACCACTGCCTACGTCGCTTCTCATCCTCTGCCTCCTCCTCAGACCCATTCCTTCTATTACTCAAATGGCTACGCCACCCCCACCGTCGCCGCCTCCGCCGCCACCAGCGCTCCTAACTATGGCAATCGCGTTCACTACCACCCTTACTATGCGAATCAGGCTGCTCCAGCCTGGGGCCCTGTTCGTCCCCCCGTTGCTGCTGCCGCCGCCGCAGCACCGCCACCGCCCTATGTCGACCATCAAACCACTAAGAAGATTAGGAACGATGTGAACTTGCATAAAGATACGTTGCGGCTTGAGATTGATGAGCTCAACCCCGATCATCACTTGGTCTCTTTCGTTTTTGATGCCCTCTTTGATGGAAGAATTACTATCTACTACTTAGCCAAAGAAGAAGAAAAATGTAGGTTTATTTCACTATATCCTGATGCATTTGCGCCAGTCACATTCCAGTTTCAAAAAGGAGTCGGCCAGAAGTTTCGTCAGCCTACTGGAACGGGCATTGACCTTGGTTTCTTTGAGTTAGATGATCTTGCAAAGCCCTCACCTGAAGAAGATGTGTTTCCCCTCGTAATATGTGCTGAAACAAGTGTGAGAACTTCAGAAGATGAAACTCCAGGTGATTCCACAATTGATGCATCTCCTCACATGCAAATAACTCAAGCTGTCCTAGAGAAAAGCAACGGTATTGGTTCTTTTGAGGTAAAAGTAATTACGCAGATTCTCTGGATTGATGGAGTTCGTTATGAGTTGAGAGAGCTATATGGAATAGGAAGTGGCTCAACAGCTGCAGATTTTGATGATAATGATCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCAAAGGACACTGCTGTCTTACCTTGCCGACATATGTGTATGTGCAGTGAGTGTGCAAAAGCATTACGGCTTCAATCCAATAAGTGCCCAATATGCCGCCAACCTATTGAGGAGCTCATGGAAATCAAGATAAACAACGATGACCAATGA 1173 0.4817 MGISWSNTNSNTNRRRRNSYPPPLPPPYYYSSDPNHPQLPPPPPPPQPPPPPPQGYYFPPTTAYVASHPLPPPQTHSFYYSNGYATPTVAASAATSAPNYGNRVHYHPYYANQAAPAWGPVRPPVAAAAAAAPPPPYVDHQTTKKIRNDVNLHKDTLRLEIDELNPDHHLVSFVFDALFDGRITIYYLAKEEEKCRFISLYPDAFAPVTFQFQKGVGQKFRQPTGTGIDLGFFELDDLAKPSPEEDVFPLVICAETSVRTSEDETPGDSTIDASPHMQITQAVLEKSNGIGSFEVKVITQILWIDGVRYELRELYGIGSGSTAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELMEIKINNDDQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272058g00003 390 Pfam Zinc finger, C3HC4 type (RING finger) 333 379 - -
Stsc272058g00003 390 SUPERFAMILY RING/U-box 334 380 - -
Stsc272058g00003 390 ProSiteProfiles Zinc finger RING-type profile. 335 374 IPR001841 -
Stsc272058g00003 390 CDD mRING-HC-C3HC5_MGRN1-like 333 374 IPR045195 -
Stsc272058g00003 390 MobiDBLite consensus disorder prediction 1 18 - -
Stsc272058g00003 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 384 IPR013083 -
Stsc272058g00003 390 SMART ring_2 335 373 IPR001841 -
Stsc272058g00003 390 PANTHER MAHOGUNIN 1 384 IPR045194 GO:0061630
Stsc272058g00003 390 MobiDBLite consensus disorder prediction 1 67 - -
Stsc272058g00003 390 MobiDBLite consensus disorder prediction 19 58 - -
Stsc272058g00003 390 FunFam probable E3 ubiquitin-protein ligase LOG2 319 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272058g00003 Stsc-Chr272058 4655 7928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272058g00003 80 390 C3H Transcription Factor Family AT3G06140 56.604 8.69e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272058g00003 - - adu:107465273 599.742