Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272057g00008 ATGCTCCTCACACTCTTCATAATATCCATCGCCCTTTTCCTCCTCTCCCTCTCCTTCTCCAGGGAGCTATGGAGGACCCTCCAAGACTGCTTCCACGTCTACCACTTCTTGAAGGTCCCGCAGTACAACCACAATACCTCGCAGGAGAATCACCTCTTCAGGAAGCTCTCCCTCTACTTGCATTCCCTCCCTTCTATCGAAGACTCTGATCTTACAACCCTCCTTACCGGCAACAACCAAAACGACATCCGTCTCTGCCTCGGTCCCAATCAAACCATTCAGGACCGTTTTCTCGGAGCTACCGTCTTCTGGCACTACCAAACCCAACTTGATGATCATGCTCATCACAATCCACAATTCAATCGCGATACAGCCTTTGTTCTCAAGATGAGAAAAGTCGACAAACGCCGAATCCTCCGTCCCTACCTCCAGCATATTCATGCAGTCGCCGACGATATCCAGCAGCAAGGGAACCACCAACTGCGACTATTCATGAACACTCTCGCCGCTGGACACGAAGGAGTAAGGTGGAGATCTGTTCCTTTTACCCACCCCTGCACCTTCGAAACCCTTGCCATGGAATCCGATCTCAAGAACAGGGTGAAATCCGACCTCGAATCGTTCCTCAGGGCGAAGCAGTACTACAACCGCCTTGGCCGGGTGTGGAAACGGAGCTTCCTCTTATACGGTCCCTCCGGAACCGGAAAATCGAGCTTCGTAGCTGCCATGGCCAATTTCCTTGGCTACGACGTGTACGACATCGACCTCTCCAAGATCCCTAGCGATTCGGATCTGAAACTGCTCCTACTACAGACGACGCCGAAGTCAGTGGTGGTGGTGGAGGACCTCGACCGGTTCCTGGCGGAGAAATCGACGGCGGTGAGCTCGTCAGGGATGCTGAACTTCATGGACGGCGTGGTGAGCTCGTGTTGCGGCGAAGAGAGGGTGATGGTGTTCACGATGAACAGCAAGGAACACGTGGACCCGAACCTTCTTCGTCCGGGTCGGATCGACGTTCACATCCACTTCCCCTTGTGCGATTTCACGGCGTTCAAGACGATGGCGAATAGCTACCTTGGTGTGAAGGAGCACAAGCTGTTCCCTCAGGTTCAAGAGATTTTCCAGAACGGCGCGAGCCTCAGCCCCGCCGAGATCGGCGAGTTGATGATCGCGAACCGGAACTCACCGAGTCGGGCCATCAAATCGGTGATCACCGCCTTACAAACGGACGGCGATGGGAGAGGGTCCGGGGGGCCCATGGTACGGCAGATAGGGGAGGATGACGTGGACGAACCTGACGGTGTTATGTGTGGCGAGGGTCTCCATACGGTTAAGGATTTGCGTAGATTGTACGGCTTTTTCAGGTTGAAGAATACCAGAAGATCCCCCTCCTCCAACTCCAGCTCAATGCCCAGCCCCTTGAGGTGA 1428 0.5441 MLLTLFIISIALFLLSLSFSRELWRTLQDCFHVYHFLKVPQYNHNTSQENHLFRKLSLYLHSLPSIEDSDLTTLLTGNNQNDIRLCLGPNQTIQDRFLGATVFWHYQTQLDDHAHHNPQFNRDTAFVLKMRKVDKRRILRPYLQHIHAVADDIQQQGNHQLRLFMNTLAAGHEGVRWRSVPFTHPCTFETLAMESDLKNRVKSDLESFLRAKQYYNRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLGYDVYDIDLSKIPSDSDLKLLLLQTTPKSVVVVEDLDRFLAEKSTAVSSSGMLNFMDGVVSSCCGEERVMVFTMNSKEHVDPNLLRPGRIDVHIHFPLCDFTAFKTMANSYLGVKEHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIKSVITALQTDGDGRGSGGPMVRQIGEDDVDEPDGVMCGEGLHTVKDLRRLYGFFRLKNTRRSPSSNSSSMPSPLR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272057g00008 475 SMART AAA_5 222 347 IPR003593 GO:0016887
Stsc272057g00008 475 PANTHER BCS1 AAA-TYPE ATPASE 26 408 - -
Stsc272057g00008 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 406 IPR027417 -
Stsc272057g00008 475 Gene3D - 178 345 IPR027417 -
Stsc272057g00008 475 Pfam Domain associated at C-terminal with AAA 21 106 IPR025753 -
Stsc272057g00008 475 Pfam ATPase family associated with various cellular activities (AAA) 227 345 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272057g00008 Stsc-Chr272057 72177 74214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272057g00008 218 343 Calmodulin-binding Proteins AT3G56690 27.660 1.62e-06 48.9