Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272057g00006 ATGAGGACATATACCAAGGTTTATAAACGAGGAGCTGTTGGAAGGTCCATAGACATCACCCGTTATTCAAATTATGAGGAGCTTAAACATGATCTAGCTCGCAGATTTGGCATAGAGGGCCAGTTGGAGGATCGACATAGGATAGGCTGGAAGCTTGTCTACGTAGATCATGAAAATGATGTTCTACTAGTGGGAGACGACCCTTGGGAGGAGTTCGTTAACTGTGTTCGCTGTATCAAGATTCTTTCTCCCCAAGAGGTACAACAGATGAGCTTGGATGGAGATTTTGGCAATGCTAACCTTCCAAATCAAGCTTGTAGCAGTTCTGATGGTGGAAATACTTGA 345 0.4377 MRTYTKVYKRGAVGRSIDITRYSNYEELKHDLARRFGIEGQLEDRHRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNANLPNQACSSSDGGNT 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272057g00006 114 Gene3D - 1 91 - -
Stsc272057g00006 114 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 91 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc272057g00006 114 Pfam AUX/IAA family 3 87 IPR033389 -
Stsc272057g00006 114 ProSiteProfiles PB1 domain profile. 2 86 IPR000270 GO:0005515
Stsc272057g00006 114 FunFam Auxin response factor 1 91 - -
Stsc272057g00006 114 SUPERFAMILY CAD & PB1 domains 15 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272057g00006 Stsc-Chr272057 57829 58639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272057g00006 1 113 B3 DNA Binding Superfamily AT1G19220 75.221 5.34e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc272057g00006 AUX_IAA 6.2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272057g00006 - - vum:124843738 226.868