Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272057g00003 ATGGCACTCATCATCACCGGCCGCGGCCACCGCCGCAGCTGGCCATGTACAATCATCCTGAATATCCACCTTCTAGTCACCGTAGTCGCAGCCTCCGACACAGATCTCCTCCTTAAGTTCAAGGAGTCTCTTCAATTTAACGGCGATGCGTTATCGTCGTGGAACGCAACCACGCCTCCGTGTAACGGAGGAAAGCCGAATTGGCCTCACATCTTGTGCTATAACGGAAACACATGGGGGATCAAGCTCGAGAGGATGGGGATCAAGGGATCCATCGATATGGACTCCTTGAAAGGTCTACCATATCTTCGAACAATAAGTTTCATGCACAATAACTTGGAAGGATCATGGCCTGAACTCAATAGGTTGCCGGGATTGAAGGCGGTTTATCTTTCCGATAACCAATTCTCCGGCGAGATTCCGGGGGACGCGTTCGCCGGTATGCAATGGTTGAAGAAGATTTACTTGTCAAATAACAAGTTTAGTGGTCGTTTGCCGAGTTCCCTAACGACGATGCCCAGGCTTAGGGAGCTAAGGATGGAGGGAAATCAATTTAAGGGTACAATTCCAGAATTGCCCCCAACGTTGAGATCACTTTGCGTTGCTAATAATCAATTAGAAGGACAAATACCACGTAATTTAACCAAGTTTCCTCGTGCATCTTTTGCCCCCGGTAACAAAAAGCTATGTGGATTCCCATTAAGGAACAGATGTGCATCGAACAAGACATCATTAGCGAGCGTACTCGTGCTTGCCATACTTGCTTTGTTGGCAATACTTTTGATTGCACTCTTCTTACTCTGCCTTCACAAAAAGAAGAAACAAAGAAAAGAAGAAGAAGAAATAACACATCATCAACCACCAATAATAACAACAACAACATCAGCAGCAAGAGAACCAGAAACTTCGTTGACATTGGAGGCTCCATCAATACCCTCAACTCTCAACAAGAAAGTTGGAGATCTTTCTGAAGATGTCGATGGCGGTAGCGTCAGGTCTTTAAGGTCAAATAACGGGTCTTCACGTGGATGCAAGAAAGCAGAGAGCTTGAGATTATCATTTGTGAAGTTGGAGGAAGGAAGAGAAGAGTTTGATATGCAAGATCTTTTGAAGGCCTCTGCTGAGATTCTTGGAAGTGGTCCTTATAGTTCTTCCTATAAGGCTTCTTTGTTATCTGGAACTAAAATGGTGGTTGTTAAAAGATACAAGCAGATGAACAATTGCAGTAAGGATGAATTTCAAGAACACATGAGAAGGATTGGGATGTTGACTCACCCTAATTTGCTTCCTTTGGTGGCTTACTACTTCAGAAAAGAAGAGAAGCTTTTGGTCACTGATTTTGTTGGTAATGGCAGCTTGTGTGTTCGCCTTCATGGACACCAAGCATTGGGGCTACCAAGCCTTAAATGGCCAACAAGATTAAAGATAGTGAAAGGAATATCAAGTGGTCTTGAGCATCTATACAAAGAGATGCCAAGCTTCATTGCACCACATGGCCATCTAAAATCATCAAATGTTCTTCTAAATGAAAGCTATGAACCAATCCTAACAGACTATGCTTTAGTGCCATTGATAAACCAAGAGCTAGCACCAGACATTATGGTAATTTACAAGTCACCAGAGTACTTGCAACAAGGCAGAGTGACAAAGAAATCTGATGTTTGGAGCCTTGGGATCTTGATCTTGGAGATCCTCACTGGGAAAATCCCATCAAATTTCTTGCAACAAGGGAAAGGGAGTGAGCTAAGCTTAGCAAATTGGGTTGATTCAATTGTTCCTGAAAAGTGGAGTAGTGAGGTTTTTGATAAACAAATGGGTGCAAGCAGAGAAAATGAGGTTGAGATTTCAAAGCTTTTGAGGATTGCTTTGGCTTGTTGTGAAGCTGATGTGAATAAGAGATTGGACATCAAAGAAGCTGTGGATAGAATCCAAGAGGTGAAGGAGAGTGGTGGAAACTGA 1959 0.4324 MALIITGRGHRRSWPCTIILNIHLLVTVVAASDTDLLLKFKESLQFNGDALSSWNATTPPCNGGKPNWPHILCYNGNTWGIKLERMGIKGSIDMDSLKGLPYLRTISFMHNNLEGSWPELNRLPGLKAVYLSDNQFSGEIPGDAFAGMQWLKKIYLSNNKFSGRLPSSLTTMPRLRELRMEGNQFKGTIPELPPTLRSLCVANNQLEGQIPRNLTKFPRASFAPGNKKLCGFPLRNRCASNKTSLASVLVLAILALLAILLIALFLLCLHKKKKQRKEEEEITHHQPPIITTTTSAAREPETSLTLEAPSIPSTLNKKVGDLSEDVDGGSVRSLRSNNGSSRGCKKAESLRLSFVKLEEGREEFDMQDLLKASAEILGSGPYSSSYKASLLSGTKMVVVKRYKQMNNCSKDEFQEHMRRIGMLTHPNLLPLVAYYFRKEEKLLVTDFVGNGSLCVRLHGHQALGLPSLKWPTRLKIVKGISSGLEHLYKEMPSFIAPHGHLKSSNVLLNESYEPILTDYALVPLINQELAPDIMVIYKSPEYLQQGRVTKKSDVWSLGILILEILTGKIPSNFLQQGKGSELSLANWVDSIVPEKWSSEVFDKQMGASRENEVEISKLLRIALACCEADVNKRLDIKEAVDRIQEVKESGGN 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272057g00003 652 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 648 IPR046959 -
Stsc272057g00003 652 SUPERFAMILY L domain-like 31 217 - -
Stsc272057g00003 652 Gene3D Ribonuclease Inhibitor 193 246 IPR032675 -
Stsc272057g00003 652 ProSiteProfiles Protein kinase domain profile. 371 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272057g00003 652 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Stsc272057g00003 652 SUPERFAMILY Protein kinase-like (PK-like) 375 643 IPR011009 -
Stsc272057g00003 652 Pfam Leucine rich repeat 124 185 IPR001611 GO:0005515
Stsc272057g00003 652 Pfam Leucine rich repeat N-terminal domain 31 73 IPR013210 -
Stsc272057g00003 652 Gene3D Transferase(Phosphotransferase) domain 1 449 650 - -
Stsc272057g00003 652 Pfam Protein kinase domain 375 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272057g00003 652 Gene3D Phosphorylase Kinase; domain 1 333 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272057g00003 Stsc-Chr272057 31916 35215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272057g00003 32 652 Receptor kinase-like Gene Family AT5G35390 49.375 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc272057g00003 Pkinase 4.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272057g00003 - - gmx:100804368 690.649