Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272056g00011 ATGGAGGATATGTCAAAATTATTTAGTTCATATGATTTAGAAATAGAAGAGAAGAGAGTTAGTTCTATTATCCTTGAAGACTATGTTACTAAGGATCACAAACCCAACTCTACTGATGCTGAGATGGATGAGGTGAAAGAAGAAAATGGCAGGTTGAAGATGATGATAGAGAGAGTGGAAGAGAATCATCACTCCCTTCAACTACAATTCTTTGATATCCTTCACAAAGAAGCATCCAAAGAAGTTGTAACTGATTCTGCTACAAATACAAGTGGTGATGGAACTGAAGAGGAACATGAACTTGTTTCACTTTGCCTTGGAAGAAATCCAAGTAAGCATAACAAAGATGCTGCAAGAATTGGAAACAACTCCAACAAGGTTAATAAAGAAAATAAAGAGTTGGAAAAAGCATACTTAACTCTTGGATTAGACTCTAAATCTGTGTTGCCAAAGGAATCAGCAGAAGCAACTTTGTCATCAATAAGACAGAAACATCAAATGAATGTGAAAAATAGTTCAAATGATGAAACTTCAGATCAAATGCCTGCTAAGAGAGCCAGGGTTTGTGTTAGAGCAAGATGTGATTCTCCTACGATGAATGATGGATGTCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGGAATCCATGTCCGCGAGCATACTATCGTTGCACAGTTGCGCCGGCATGCCCGGTTAGGAAACAGGTTCAAAGATGTGTTGAAGACTTATCCATCTTGATCACAACATATGAAGGGACACATAACCATCCACTTCCATTTTCTGCATCAGGCATGGCTTCCACCACTTCTGCTGCAGCTTCCATGTTTATTTCAGGTTCTTCGGAGAGTTGCAGTTCTCTATTTTTTGGGAATGTGCCTACACCACACAATGGTGTATGTCTTGGTCAGCAATTTGATCAATCAAGAGCAACAAAAAATGTCTTGCTACCAAGCAATAAAAAAACTCTAGACCTCACTGCTTCTGCTTCAAACACTTTATTACCTTCAACCATGATGATGACACCATCATTTTGGGGTAAGGAATCTGCTAACCTTTTCTCAATGCCTATTCCTATGGAGGAGAAAACACACATAATAAGGCCAGTTAAGTTGAGAAACTCTTCGAGTTGGGGTAAGAATTTTTATGAAGAATGCATGAAGAATCAAACTCTTCATCCTCCAAAGGATTCTTTTTTAGCAGAAACAATAACGAAAGCAATTAAAACAGATCCAAGTCTTCATTCTGTGATAGCTGCTGCAGTTTCATCTATTGTGGGGCAACAAGGATATTCATCAACCAGTTGCAACAAGCAAGAAGGGACAGAGATTCTTATACCTTCAACTCAATAG 1353 0.3836 MEDMSKLFSSYDLEIEEKRVSSIILEDYVTKDHKPNSTDAEMDEVKEENGRLKMMIERVEENHHSLQLQFFDILHKEASKEVVTDSATNTSGDGTEEEHELVSLCLGRNPSKHNKDAARIGNNSNKVNKENKELEKAYLTLGLDSKSVLPKESAEATLSSIRQKHQMNVKNSSNDETSDQMPAKRARVCVRARCDSPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCVEDLSILITTYEGTHNHPLPFSASGMASTTSAAASMFISGSSESCSSLFFGNVPTPHNGVCLGQQFDQSRATKNVLLPSNKKTLDLTASASNTLLPSTMMMTPSFWGKESANLFSMPIPMEEKTHIIRPVKLRNSSSWGKNFYEECMKNQTLHPPKDSFLAETITKAIKTDPSLHSVIAAAVSSIVGQQGYSSTSCNKQEGTEILIPSTQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272056g00011 450 Gene3D WRKY domain 184 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272056g00011 450 SUPERFAMILY WRKY DNA-binding domain 192 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272056g00011 450 Coils Coil 117 137 - -
Stsc272056g00011 450 ProSiteProfiles WRKY domain profile. 194 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272056g00011 450 FunFam probable WRKY transcription factor 31 184 261 - -
Stsc272056g00011 450 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 27 433 IPR044810 GO:0003700
Stsc272056g00011 450 SMART WRKY_cls 199 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272056g00011 450 Pfam WRKY DNA -binding domain 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272056g00011 450 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272056g00011 Stsc-Chr272056 71744 74226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272056g00011 42 430 WRKY Transcription Factor Family AT5G15130 40.130 4.78e-77 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272056g00011 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272056g00011 - - adu:107486739 641.728