Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272056g00010 ATGGGTTACATGAGCAAAGTTTCAAGAACTCTCAGGCAATCAAAATACCTAACACTATTGCGCAATTCAACCATTCATCACCAACAACGTGCACTCTTGTGTTCCCAGTCGCGCCAACAAAACATCAAGGACAAGAGCGCCATTGATTTGAGCCAGTACCCTCCTGAACTCATTCGAAATTTCTCAATCATTGCGCATGTGGATCATGGCAAGTCTACCCTCGCTGATCGACTCCTTGAACTCACTGCTACCATTAAAAAAGGACATGGCCAGCCCCAATATCTTGATAAGTTGCAGGTGGAGAGGGAAAGGGGAATCACAGTTAAAGCACAGACAGCAACAATGTTCTATAAGCACAGGGCAAATGGTGACGATATTAGTGACGGAAAGGAGTGGCCTAGTTATTTGCTGAATCTTATTGATACTCCTGGTCATGTGGATTTTAGCTATGAGGTGTCAAGGTCACTTGCAGCTTGTCAAGGCGTGCTTTTGGTTGTTGATGCTGCGCAAGGAGTCCAGGCGCAAACCGTTGCTAATTTCTACCTTGCTTTTGAGGCCAACCTGGCAATTGTACCTGTAATAAACAAGATTGACCAGCCAACTGCTGATCCTGATCGCATTAAAGCCCAATTGAAATCGATGTTTGATCTTGAACCTAGTGATGCATTGCTAACGTCTGCTAAAACTGGAAAGGGTCTTGAGCAAGTCCTTCCAGCTGTTATAGAGCGCATCCCTCCTCCTCCAGGGAAAAGTGATAATTCTCTGCGTATGCTTTTGCTTGATTCATACTATGATGAATACAAGGGGGTAATATGCCATGTTGCTGTTGTTGATGGTATCCTGCGCAAGGGGGATAAGATTTCATCTGCTGCTACTGGTCAGTCATATGAAGCTTTGGATATTGGCATCATGCATCCTGAACTTACACCTACTGGGATCTTGCTTACTGGACAAGTTGGTTATGTTGTAAGTGGCATGCGCTCAACCAAAGAGGCCCGTGTTGGAGATACAATTTACCATACTCGAAACACCGTACAGGCTCTTCCAGGATTTAAACCAGCAAAGCATATGGTTTTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAGGCTGACATGTAATGATGCCAGTGTCTCTATTACTAAAGAAACTAGCACAGCTCTAGGTTTGGGTTTCAGGTGTGGATTTCTGGGCTTACTTCACATGGATGTTTTTCATCAACGGCTTGAACAGGAGTATGGAGCTCATATTATCTCAACTGTTCCTACTGTGCCTTATATATTTGAATATTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTTCGTTACCCTCTAATCCCAAGCAACGAGTGACAGCATGTTGGGAACCTACAGTATTAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCAGTTATCACCCTTTGCTCCGAGCGTAGGGGTCAGCAGTTGGAGTACTCATTCATTGACAGTCAACGGGCATTCATGAAATATCGCATGCCTTTGAGAGAAATTGTTGTTGACTTCTATAATGAATTGAAGAGCATAACATCAGGCTATGCATCATTTGATTACGAGGATGCAGATTATCAGCAATCTGATCTGGTGAAACTTGATATCCTCCTCAATGGACAACCTGTTGATGCAATGTCAACTATTGTTCATAACATGAAAGCATATCGCGTTGGGCGTGAACTAGTAGAGAAATTGAAGAAAGTCATAGACAGGCAAATGTTTGAGATAACAATACAAGCTGCCATTGGTTCAAAGATTATAGCAAGGGAGACGGTTTCTGCAATGAGGAAGAATGTTCTTGCGAAGTGTTACGGTGGCGATGTTACTCGAAAGCGAAAGCTGTTGGAAAAGCAAAAGGAAGGAAAGAAGCGAATGAAACGCGTTGGCTCCGTTGATATACCACAAGAAGCTTTCCATGAACTATTGAAGGTTTCATAG 1986 0.431 MGYMSKVSRTLRQSKYLTLLRNSTIHHQQRALLCSQSRQQNIKDKSAIDLSQYPPELIRNFSIIAHVDHGKSTLADRLLELTATIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHRANGDDISDGKEWPSYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFEANLAIVPVINKIDQPTADPDRIKAQLKSMFDLEPSDALLTSAKTGKGLEQVLPAVIERIPPPPGKSDNSLRMLLLDSYYDEYKGVICHVAVVDGILRKGDKISSAATGQSYEALDIGIMHPELTPTGILLTGQVGYVVSGMRSTKEARVGDTIYHTRNTVQALPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIFEYSDGSKLEVQNPASLPSNPKQRVTACWEPTVLATIIIPSEYVGPVITLCSERRGQQLEYSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMSTIVHNMKAYRVGRELVEKLKKVIDRQMFEITIQAAIGSKIIARETVSAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272056g00010 661 CDD lepA_C 466 545 IPR035654 -
Stsc272056g00010 661 Pfam Elongation factor G C-terminus 466 551 IPR000640 -
Stsc272056g00010 661 Gene3D - 545 619 IPR038363 -
Stsc272056g00010 661 SUPERFAMILY EF-G C-terminal domain-like 357 434 IPR035647 -
Stsc272056g00010 661 Pfam GTP-binding protein LepA C-terminus 553 659 IPR013842 -
Stsc272056g00010 661 FunFam Translation factor GUF1, mitochondrial 250 348 - -
Stsc272056g00010 661 FunFam Translation factor GUF1, mitochondrial 349 430 - -
Stsc272056g00010 661 SUPERFAMILY EF-G C-terminal domain-like 465 559 IPR035647 -
Stsc272056g00010 661 FunFam Translation factor GUF1, mitochondrial 431 543 - -
Stsc272056g00010 661 NCBIfam translation elongation factor 4 57 660 IPR006297 GO:0005525
Stsc272056g00010 661 Gene3D Elongation Factor G (Translational Gtpase), domain 3 349 430 - -
Stsc272056g00010 661 CDD EF4_II 255 340 - -
Stsc272056g00010 661 Gene3D - 56 249 IPR027417 -
Stsc272056g00010 661 CDD LepA 59 247 - -
Stsc272056g00010 661 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 56 248 IPR000795 GO:0003924|GO:0005525
Stsc272056g00010 661 Hamap Elongation factor 4 [lepA]. 54 661 IPR006297 GO:0005525
Stsc272056g00010 661 PRINTS GTP-binding elongation factor signature 60 73 IPR000795 GO:0003924|GO:0005525
Stsc272056g00010 661 PRINTS GTP-binding elongation factor signature 190 199 IPR000795 GO:0003924|GO:0005525
Stsc272056g00010 661 PRINTS GTP-binding elongation factor signature 138 148 IPR000795 GO:0003924|GO:0005525
Stsc272056g00010 661 PRINTS GTP-binding elongation factor signature 103 111 IPR000795 GO:0003924|GO:0005525
Stsc272056g00010 661 SUPERFAMILY Translation proteins 246 344 IPR009000 -
Stsc272056g00010 661 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 96 111 IPR031157 -
Stsc272056g00010 661 Gene3D Translation factors 250 348 - -
Stsc272056g00010 661 NCBIfam small GTP-binding protein domain 61 236 IPR005225 GO:0005525
Stsc272056g00010 661 CDD EF4_III 356 431 - -
Stsc272056g00010 661 Gene3D - 431 544 - -
Stsc272056g00010 661 FunFam Elongation factor 4 55 249 - -
Stsc272056g00010 661 Pfam Elongation factor Tu GTP binding domain 58 245 IPR000795 GO:0003924|GO:0005525
Stsc272056g00010 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 269 IPR027417 -
Stsc272056g00010 661 FunFam Translation factor GUF1, mitochondrial 545 619 - -
Stsc272056g00010 661 PANTHER TRANSLATION FACTOR GUF1-RELATED 28 660 IPR006297 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272056g00010 Stsc-Chr272056 67176 71593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272056g00010 58 199 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 1.15e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272056g00010 K21594 - gmx:100781092 1174.46