Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272055g00004 ATGCAAACGGCAACGAGAGCGGAAGCCGAACGTCTACTCGGGATCGCAGAAAAGCTCCTACAGACCCGCGATCTCAACGGCTCCCGCGAGTTCGCCATCCTCGCCCAAGAAACCGAACCTCTTCTAGAAGGTTCCGATCAGATCCTCGCCATCGTCGACGTCCTCTTAGCCGCCGATAATCGTCCAAACACCGCTGCCGGCCACCCCCACCACCACCAACCCGACTGGTACGGCGTCCTCCAGGTGGAGCGCCGCAGCAACGACCTCGACCTCATCAAGCGCCACTACCGCCGCCTCGCTCTCCTCCTCCACCCGGACAAGTGCCGCTTTGCTTACGCCGACCACGCCTTCAAGCTTGTGGTCGACGCCTGGGCGGTGCTCTCGGACCCAATCAAGAAGTCCAACTACGACAAGGAGCTCTCCTTCTTCTCCCGAGTCGACCTCTCTGTTCCCGGCTGGGTTCAGCAAGACAAGCTCCCGGTCCGTAGAACCGGACCTGGGCCTGGGCCAGGTCCTAGCGCCAGGGCAAATAATAACAGTACCACCATTAACTTCGACGGCATGAACATCAGCATGAGTAATAACACACCCGCGTCAGCCGCGAGGAACGAGATTGCGACCGACGAGAACTCGAACGCCAGGCTGCGGCAGGGACAGAACAGATCGGGAAATTTCTGGACCGCGTGTCCGTACTGCTATAGGTTGTATGAGTACCCTAGGGTTTATGAGGGTTGCTGCTTGAGGTGCCAGAATTGCGATAGGTCCTTCCATGGGATCTCGATTCCTTCGCTGCCTCCTTTGGTGCCGGGGCAGGATGCTTATTACTGTTGCTGGGGGTTCTTTCCGATGGGGTTTGTGGTTGGGAATGTAGGATCTGCCGAGAAAGAGCCTGCGCCAGCCCCGGCTCCGGGCCCGGCGCTGGCGCCTGTCGCTGTTGCAGCTCCACAGGCTTCGTCCTCACTGCCGAATTGGATGCCTGCCGCAGCTGTTCCGGAGAATGGGGGAAATGTTGCTGTGCCGATTGCAACCCCGACACCTGCTAGGGTGGCTGCGAGAGGAAGTGTTTCGAATGGAATTGCTGGATCTGGGTCTGGGCCGAAGAAGCGAGGGAGGCCGCGGAAGTATCCGCTGCAGTCGTGA 1140 0.5956 MQTATRAEAERLLGIAEKLLQTRDLNGSREFAILAQETEPLLEGSDQILAIVDVLLAADNRPNTAAGHPHHHQPDWYGVLQVERRSNDLDLIKRHYRRLALLLHPDKCRFAYADHAFKLVVDAWAVLSDPIKKSNYDKELSFFSRVDLSVPGWVQQDKLPVRRTGPGPGPGPSARANNNSTTINFDGMNISMSNNTPASAARNEIATDENSNARLRQGQNRSGNFWTACPYCYRLYEYPRVYEGCCLRCQNCDRSFHGISIPSLPPLVPGQDAYYCCWGFFPMGFVVGNVGSAEKEPAPAPAPGPALAPVAVAAPQASSSLPNWMPAAAVPENGGNVAVPIATPTPARVAARGSVSNGIAGSGSGPKKRGRPRKYPLQS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272055g00004 379 ProSiteProfiles dnaJ domain profile. 75 140 IPR001623 -
Stsc272055g00004 379 PRINTS DnaJ domain signature 77 95 IPR001623 -
Stsc272055g00004 379 PRINTS DnaJ domain signature 112 132 IPR001623 -
Stsc272055g00004 379 PRINTS DnaJ domain signature 96 111 IPR001623 -
Stsc272055g00004 379 Pfam DnaJ domain 75 137 IPR001623 -
Stsc272055g00004 379 MobiDBLite consensus disorder prediction 350 379 - -
Stsc272055g00004 379 SMART dnaj_3 74 132 IPR001623 -
Stsc272055g00004 379 SUPERFAMILY Chaperone J-domain 68 140 IPR036869 -
Stsc272055g00004 379 MobiDBLite consensus disorder prediction 158 179 - -
Stsc272055g00004 379 CDD DnaJ 75 129 IPR001623 -
Stsc272055g00004 379 Gene3D DnaJ domain 63 147 IPR036869 -
Stsc272055g00004 379 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 333 - -
Stsc272055g00004 379 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272055g00004 Stsc-Chr272055 34520 37079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272055g00004 221 377 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 45.238 3.03e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272055g00004 - - gmx:100816918 475.707