Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272053g00012 ATGACTGTCTTCAACTCCCTCAGATCGTCAAAATTGGTCTCATGGAAACCTACCGGCAGGCTTCAGCAAACCCTAGCGAACTGCATTGAGCGGCGGGGCAAGGCTTTGCATTCAGGAAAGGATTCAACGGTGCGATTGTGCCCAGGCTTCGCCGGCGAAGGGAGGTACTTCGATTACCAGAGCAATTTGATTCCGGCATTTATTGATTTTGTTCAGGTTTCACCCCTTTGCACCACTCTCTGTAAAAATGGTTTCCGTGTCCGAACCGTGGAGCACTTGCTTTCTGCATTGGAGGCTACTGGTGTTGATAATTGCAGAATTGAGATTGAGAATTCAGATACTGAAGAGCATGATGCTGAGATTCCTATATTTGATGGGTCAGCAAAAGAATGGGTTGAAGCAGTGGAGGAAGTTGGTTTAGAGGTGGCAATGACTCATGATGGCAAACATTGTGAGAAAATGGCACCACATGTGAATGAACCAGTGTATGTTTGGAGGGATGATTCTTTTGTTGCTGCATTTCCTTCAGAAGTGGGTAAAATAAGTTATGGCATCAGCTTTCCACAGGCACCAGCTATAGGTTCCCAATGGTTTTCTATACCATCCATGGACAATTTGTTTTATACCAGACAGATCGCTCTGGCAAGAACCTTCTGCATTTATGAGGAGATCGAGCAAATGCGCAATGTTGGACTTATCAAAGGGGGTTCTCTGGAAAATGCCATTGTATGCAGTGCTAGTGGAGGTTGGTTGAATCCACCTTTGCGTTTTAATGATGAACCATGCCGCCACAAAGTCTTAGATCTTATTGGTGATCTTTCACTTTTTGCTCAGTTTGGGAATCAAGGACTCCCGGTGGCGCACATTGTAGCTTACAAGGGTGGCCATGCTTTGCATGCTGGTTTGGCACGCCAATTAATGGGGGATTGA 930 0.457 MTVFNSLRSSKLVSWKPTGRLQQTLANCIERRGKALHSGKDSTVRLCPGFAGEGRYFDYQSNLIPAFIDFVQVSPLCTTLCKNGFRVRTVEHLLSALEATGVDNCRIEIENSDTEEHDAEIPIFDGSAKEWVEAVEEVGLEVAMTHDGKHCEKMAPHVNEPVYVWRDDSFVAAFPSEVGKISYGISFPQAPAIGSQWFSIPSMDNLFYTRQIALARTFCIYEEIEQMRNVGLIKGGSLENAIVCSASGGWLNPPLRFNDEPCRHKVLDLIGDLSLFAQFGNQGLPVAHIVAYKGGHALHAGLARQLMGD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272053g00012 309 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
Stsc272053g00012 309 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 308 IPR020568 -
Stsc272053g00012 309 Gene3D lpxc deacetylase, domain 1 20 146 IPR015870 GO:0008759|GO:0009245
Stsc272053g00012 309 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
Stsc272053g00012 309 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 140 IPR020568 -
Stsc272053g00012 309 Gene3D lpxc deacetylase, domain 2 157 309 IPR011334 GO:0008759|GO:0009245
Stsc272053g00012 309 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 3 308 IPR004463 GO:0008759|GO:0009245
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272053g00012 Stsc-Chr272053 64987 69350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272053g00012 4 309 Carbohydrate Esterase AT1G25054 62.418 7.54e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272053g00012 K02535 - gmx:100814465 499.975