Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272053g00002 ATGGCGACACCGCCACCAATGGGGCCACCGGGAAACCCAATGTTTGACGGAGGACCGCCTCCGCCGCCGCCAACTCCAGGGACTGACATGACTGGAATTTGCTTCAGAGACCAGCTTTGGCTCAATACCTACCCATTGGATCGGAACTTGGTGTTTGATTACTTTGCTTTGTCCCCCTTTTATGATTGGAGCTGCAACAATGAGCAGCTTCGAATGCGCTCCGTCCACCCCCTCGACATCTCTCAGCTATCGAAGATGACAGGGATAGAATATATGCTCAGTGAAGTTTTGGAACCTCACCTTTTTGTAATTCGCAAGCAAAAGAGAGATAGCCCTGAGAAAGTTACACCGATGCTGGCGTACTACATCTTGGATGGTTCGATTTACCAGGCACCACAACTATGCAATGTTTTTGCTGCCCGAATTGGAAGGGCACTCAATTACATACAGAAAGCCTTTGCTACAGCTGCCTCGAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGACTGCAGTAACGGAATCAAAGGTTGCTAAGGAGACAATTGACTTAAAGGAAGTTAGGCGCGTGGACCAAATTCTTGCATCGCTGCAGCGCAAGCTACCACCAGCCCCACCACCACCACCATTTCCAGAAGGATATATTCCTCCTGCAGCAGGAGAAACCGATAAAGGCCCCGAAGCTCAAGAAGGAGCAGAGTTGCAGGCTCCTTCTGGCGATCCCATCGTTGATCAAGGACCTGCAAAAAGAATGAAATTGATGTAA 771 0.4877 MATPPPMGPPGNPMFDGGPPPPPPTPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWSCNNEQLRMRSVHPLDISQLSKMTGIEYMLSEVLEPHLFVIRKQKRDSPEKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALNYIQKAFATAASKLEKIGYVDSENETAVTESKVAKETIDLKEVRRVDQILASLQRKLPPAPPPPPFPEGYIPPAAGETDKGPEAQEGAELQAPSGDPIVDQGPAKRMKLM 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272053g00002 256 Pfam MED6 mediator sub complex component 33 158 IPR007018 GO:0003712|GO:0006357|GO:0016592
Stsc272053g00002 256 MobiDBLite consensus disorder prediction 202 217 - -
Stsc272053g00002 256 MobiDBLite consensus disorder prediction 1 29 - -
Stsc272053g00002 256 PANTHER MED-6-RELATED 16 255 IPR007018 GO:0003712|GO:0006357|GO:0016592
Stsc272053g00002 256 MobiDBLite consensus disorder prediction 1 28 - -
Stsc272053g00002 256 MobiDBLite consensus disorder prediction 200 256 - -
Stsc272053g00002 256 FunFam Mediator of RNA polymerase II transcription subunit 6 27 156 - -
Stsc272053g00002 256 Gene3D Mediator complex, subunit Med6 27 156 IPR038566 -
Stsc272053g00002 256 PIRSF MED6_meta/plant 19 255 IPR016820 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272053g00002 Stsc-Chr272053 29776 35257 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Stsc272053g00002 Med6 3.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272053g00002 K15128 - gmx:100792248 397.512