Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272053g00001 ATGCCGGGATTAACGTGCAATGCTTGCAACAAAGAATTCAATGACGATACAGAGCAAAAGCTTCATTACAAGTCTGAGTGGCATCGGTACAACCTCAAGCGCAAGGTGGCTGGGGTCCCTGGGGTGACAGAAGCTCTATTTCTGGCTAGACAATCTGCTCTTGCTCAAGAGAAGGATAAGTCTAATGAGACCCCTATGCTCTATAGCTGTGGTCTTTGCGGGAAGGCATATAAAAGTTCCAAGGCTCATGCTGAGCACCTTAAATCACGTGGTCATATCATGCGAGCATCCGAAGGAACTAGCCAATTAGATGAGAAGGCAATAGTCAAGCCACTTCCACAACGCGTTGCAAATAGGCCACCGCCGAGAAGAGAGGTAGACAACTCTGACAATGAAGAAAGTGAAGACGAATGGGAGGAGGTTGATCCTGAAGATGATTTGGTTAATGATGCTGCAAAGTCTATCACTGATTTGGACATGAACGATAATGACAACAATGCTGATATGGACGAAGATGATGATAGTTTTGAGGAGTTGGATCCTTCATGTTGCTTTATGTGTGATCAAGAGCACAAGACAATTGAAAGCTGCATGGTTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTTGAATATTTGAAGGATCCAAAAGGCCTTCTAACTTATCTTGGACTTAAGGTCAAAGGGGACTTCATGTGTCTTTACTGCAACGACCGATGTTATCCTTTCAGCAGCTTGGAAGCAGTGAGGAAGCATATGGAAGCTAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGATGATGAAGAAGCGGAGTTGGAAGAATTCTACGATTATAGCAGCAGTTATGTGGACGAGCAAGGCAAGCAGCTGGTTGTTTCCGGTGATGCAGTTAACAATGTAGAATTTGGTGGTGGTGAGCTCATAATCACCAAGAAAACTGATAGTGGAACATCAACCAGAACGCTTGGTTCCCGGGAGTTTCTGCGTTATTATCGTCAGAAACCTCGGCCTTCATCTGCAAGTAATATGGCTATTACTGCTGCATTGGCTTCAAGGTATAGAGGCATGGGTTTGGCTACTGTTCAATCAAGGGAACAAATGGTGAGGATGAAAGTACTGAAGGAAATGAGCAAGTCAGGTGTGGAGCATATGCGCACAAAGATTGGAATGAAGAGCAATGTTATAAGGAACTTACCAAAGAATGTTCCATATTAG 1224 0.4387 MPGLTCNACNKEFNDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSALAQEKDKSNETPMLYSCGLCGKAYKSSKAHAEHLKSRGHIMRASEGTSQLDEKAIVKPLPQRVANRPPPRREVDNSDNEESEDEWEEVDPEDDLVNDAAKSITDLDMNDNDNNADMDEDDDSFEELDPSCCFMCDQEHKTIESCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKGDFMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDEEAELEEFYDYSSSYVDEQGKQLVVSGDAVNNVEFGGGELIITKKTDSGTSTRTLGSREFLRYYRQKPRPSSASNMAITAALASRYRGMGLATVQSREQMVRMKVLKEMSKSGVEHMRTKIGMKSNVIRNLPKNVPY 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272053g00001 407 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Stsc272053g00001 407 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Stsc272053g00001 407 SMART c2h2final6 68 92 IPR013087 -
Stsc272053g00001 407 SMART c2h2final6 233 260 IPR013087 -
Stsc272053g00001 407 SMART c2h2final6 182 204 IPR013087 -
Stsc272053g00001 407 SMART c2h2final6 4 28 IPR013087 -
Stsc272053g00001 407 Pfam C2H2 type zinc-finger (2 copies) 184 284 IPR041661 -
Stsc272053g00001 407 MobiDBLite consensus disorder prediction 130 146 - -
Stsc272053g00001 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
Stsc272053g00001 407 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Stsc272053g00001 407 MobiDBLite consensus disorder prediction 96 148 - -
Stsc272053g00001 407 SUPERFAMILY beta-beta-alpha zinc fingers 65 98 IPR036236 -
Stsc272053g00001 407 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Stsc272053g00001 407 SUPERFAMILY beta-beta-alpha zinc fingers 170 229 IPR036236 -
Stsc272053g00001 407 PANTHER ZINC FINGER PROTEIN 622 2 406 IPR040025 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272053g00001 Stsc-Chr272053 26099 29244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272053g00001 1 407 C2H2 Transcription Factor Family AT4G31420 66.184 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272053g00001 zf-C2H2_2 4.1e-26 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272053g00001 K14816 - gmx:100796317 657.907