Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272052g00007 ATGGCTGAGAACTCAAACCTCCTGCTATGTTCCGAGAACAACATCGCTTGTTTTGATGATGATGATGGTGATGATGTTGCTGCTGCTGCTGCTGATGGGTCTGGAATCTTGCCATGTCGGGACCACAGCAACAACCTTAACTCCGACCAACCATGTCTGAGTTCAGAAAACCGTGGATCGGGTCCATTGTCTTGGTTTGATGTTCTGAGTGAAGAAACTATCAAAGGCATGGTGGAAGGGGAGAAAGATCATTTGCCAAAGGAGGATTATCTTCAGAGGCTACGTAGTGGGGACTTGGACCTCACTGGTAGGAGAGAGGCCATTGATTGGATTTCCAAGGCTCATTCCTACTATGGTTTTGGACCCTTGACATTTTGTCTATCTGTGAACTACTTGGATCGCTTCTTATCGGTGTACGAATTGCCGAGAGGTAAAAGTTGGACTACGCAATTGTTAGCAGTTGCTTGCTTGTCGATTGCGGCGAAAATGGAGGAGATTAGAGTGCCGCAATCCGTGGACATACAGGTTGGAGAGCCAAAGTTTGTATTTGAAGCTAAAACCATTCAAAGAATGGAACTGTTGGTATTAAGCACATTGAGATGGAAAATGCAAGCTTTAACTCCTTTTTGCTTCATAGATTATTTCCTAAGGAAGATCAATTTTGAGCAACATTTGTCAAATCGATCCATTTCGAGATCGGTACAGCTCATCCTTAGCATAATTAGAGGGATTGACTTCTTGGCGTTCAGGCCTTCTGAGATCGCAGCGGCTGTGGCGATTTCTGTTTCAAGGGAGTTGCAACAAGCGAAAGATATCGATAAGGCCGTAGCTAGCTTCCTCATTGTAGAGAAGGAGAAAGCTCTAAAGTGTGTTGAATTGATAAGAGACTTGACATTGATGAATGTTTCAAATTTTTGCACAAAACATGTGCCATTTGTGCCTCAAAGCCCAATTGGGGTGCTTGATGGTTGTGGATGCTTGAGCTTTAAGAGTGATGAATTAACAAATGCTGGTTCATCATGCCCAAATTCCTCAAATATTAGTCCAAAAACTAAAAGGTTCAAATCAGAATAA 1074 0.4292 MAENSNLLLCSENNIACFDDDDGDDVAAAAADGSGILPCRDHSNNLNSDQPCLSSENRGSGPLSWFDVLSEETIKGMVEGEKDHLPKEDYLQRLRSGDLDLTGRREAIDWISKAHSYYGFGPLTFCLSVNYLDRFLSVYELPRGKSWTTQLLAVACLSIAAKMEEIRVPQSVDIQVGEPKFVFEAKTIQRMELLVLSTLRWKMQALTPFCFIDYFLRKINFEQHLSNRSISRSVQLILSIIRGIDFLAFRPSEIAAAVAISVSRELQQAKDIDKAVASFLIVEKEKALKCVELIRDLTLMNVSNFCTKHVPFVPQSPIGVLDGCGCLSFKSDELTNAGSSCPNSSNISPKTKRFKSE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272052g00007 357 CDD CYCLIN_AtCycD-like_rpt2 207 294 - -
Stsc272052g00007 357 SMART cyclin_7 109 197 IPR013763 -
Stsc272052g00007 357 SMART Cyclin_C_2 206 333 IPR004367 -
Stsc272052g00007 357 PANTHER CYCLINS 72 296 IPR039361 -
Stsc272052g00007 357 SUPERFAMILY Cyclin-like 63 203 IPR036915 -
Stsc272052g00007 357 CDD CYCLIN_AtCycD-like_rpt1 104 201 - -
Stsc272052g00007 357 MobiDBLite consensus disorder prediction 336 357 - -
Stsc272052g00007 357 FunFam D2/4-type cyclin 87 200 - -
Stsc272052g00007 357 SUPERFAMILY Cyclin-like 188 298 IPR036915 -
Stsc272052g00007 357 Gene3D - 76 293 - -
Stsc272052g00007 357 Pfam Cyclin, N-terminal domain 75 203 IPR006671 -
Stsc272052g00007 357 Gene3D - 87 204 - -
Stsc272052g00007 357 ProSitePatterns Cyclins signature. 104 135 IPR006671 -
Stsc272052g00007 357 Pfam Cyclin, C-terminal domain 207 301 IPR004367 -
Stsc272052g00007 357 MobiDBLite consensus disorder prediction 336 351 - -
Stsc272052g00007 357 FunFam D6-type cyclin 201 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272052g00007 Stsc-Chr272052 62284 65034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272052g00007 70 269 Core Cell Cycle Gene Families AT5G65420 63.861 4.74e-88 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272052g00007 K18810 - gmx:100794010 399.823