Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272051g00002 ATGCATCACCGGGCCAATATAGCAGGCAAGGTGGTACTTAATGTTGGATGCGGTACTGGATTTCTTGCTTTGTTTTGGGCTCAGGCTGGTGCAAGGAAGTTAAACCCTGCTGAAACTGACAATTCCACGCTTCTAAGGAACAGAAGAGAGATTCAGCTAAAGAATATGCTACGTGAGATTGCAAAGCTACTTGACACTGGTAAAGGAAATGCTCGCATCAAGGTGGAGCATATTATCATAAAGGAGAACATGATGGCTGCCCAAGAGATCATTGAACTGTTTTGTGAACTAATTGTTGTGTGA 303 0.4323 MHHRANIAGKVVLNVGCGTGFLALFWAQAGARKLNPAETDNSTLLRNRREIQLKNMLREIAKLLDTGKGNARIKVEHIIIKENMMAAQEIIELFCELIVV 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272051g00002 100 Gene3D - 42 100 IPR042277 -
Stsc272051g00002 100 Gene3D Vaccinia Virus protein VP39 1 41 IPR029063 -
Stsc272051g00002 100 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 6 33 IPR029063 -
Stsc272051g00002 100 Pfam Regulator of Vps4 activity in the MVB pathway 43 99 IPR005061 GO:0015031
Stsc272051g00002 100 PANTHER IST1 FAMILY MEMBER 44 99 IPR005061 GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272051g00002 Stsc-Chr272051 16862 17601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272051g00002 9 82 C2H2 Transcription Factor Family AT3G12270 29.730 2.63e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272051g00002 - - gmx:100800901 89.3521