Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272050g00002 ATGAGCAATAATAATATGAACAATTTCATGCCTTTGCCTGGGTCTCGAAGAACAAGTAGTGATCATAGAAGAGCATTTAATGTTTACACTTTTGATAATAGTGATTCCAATGAGGTGCCTGTGTTTTACAGATCTCGCTCTAATCATAACCAAGGGAACAGGAATTTGGGTTCTCAAGATCCAAGGAGGTTGTTTGAAAGAAGAACTCCATCATTTGGAAGCCAACGCCACACTGCACCAATGTTTCAAGCACAACCACAAAACAGACAACAATTTCATTTTCATAATGGAGACATAGGAAGGAGTTCAAACCCCAGCTTTAGAGAGACTTTTCCACAATCACCGCCACGAACTGTGACAACCATAGAAGTTCCCCCACCGCAAGTAGAGAATTCTGAGTCAATGGTTCACAGCAAGCTCAAGAAAGAAGTCTACAACCCCGCGCCAAAGCGCCTAGCCCGGAAACTCGGCTTATACTACAGAGCTAACAGCAACAATGGCTCGAGTGGTATACGGGAAAGGGAGAAAGACAAGGATGAAGAAGGTAAGAGTTGTGCTGTTTGCTTGGAAGATTTTGAGGCAAAAGAGGAAGTGATGGTAACACCATGTAACCACATGTTCCATGAGGGATGCATTGTTCCTTGGGTAACAAGCAAAGGACAGTGCCCAGTTTGTAGGTTTGTGATAATTGAGAGAGTTAGAGGGAACAATCTTTACCCTTCTTCGTTCAATAGCAGTAACATTGCAAATTTGGAACCAAGTGAACTAATTGCTGGTGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAGTTAGGCAATGGAATGTACTAG 840 0.425 MSNNNMNNFMPLPGSRRTSSDHRRAFNVYTFDNSDSNEVPVFYRSRSNHNQGNRNLGSQDPRRLFERRTPSFGSQRHTAPMFQAQPQNRQQFHFHNGDIGRSSNPSFRETFPQSPPRTVTTIEVPPPQVENSESMVHSKLKKEVYNPAPKRLARKLGLYYRANSNNGSSGIREREKDKDEEGKSCAVCLEDFEAKEEVMVTPCNHMFHEGCIVPWVTSKGQCPVCRFVIIERVRGNNLYPSSFNSSNIANLEPSELIAGELLSILRAMEEAFQLGNGMY 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272050g00002 279 SMART ring_2 185 225 IPR001841 -
Stsc272050g00002 279 MobiDBLite consensus disorder prediction 1 15 - -
Stsc272050g00002 279 MobiDBLite consensus disorder prediction 1 20 - -
Stsc272050g00002 279 SMART ringv_2 184 226 IPR011016 GO:0008270
Stsc272050g00002 279 MobiDBLite consensus disorder prediction 96 124 - -
Stsc272050g00002 279 MobiDBLite consensus disorder prediction 45 64 - -
Stsc272050g00002 279 Pfam Ring finger domain 184 226 IPR001841 -
Stsc272050g00002 279 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 44 227 - -
Stsc272050g00002 279 SUPERFAMILY RING/U-box 176 232 - -
Stsc272050g00002 279 FunFam RING/U-box superfamily protein 169 243 - -
Stsc272050g00002 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 238 IPR013083 -
Stsc272050g00002 279 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272050g00002 Stsc-Chr272050 14916 17101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272050g00002 131 276 C3H Transcription Factor Family AT3G58720 51.678 1.18e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272050g00002 - - gmx:100802085 272.707