Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272049g00002 ATGGCTGCCAAACTTGAGAGTGGAGCTTATCTCTCTTCTTTTGTTGATGCTATTTCAGAGAAGCTGTATTTGTTACTTGAAGATGACTATGTCCTCGAAATAGACGACTCTGCCCCGGAGTTGCTTCAAAGGCTGTATGATTGTCTGTGTGAAGTTGGACCTGTGCTTGATGATGCTGAGCTGAAGCAGTTCCGTAACGATAGAGTGAAGAAGTGGCTCGTTGACCTCCAAGATGCTCTCTACATGGCTGATGACTTGGTGGATGAACTCTGCACTAAAGCTGCCACTGCCACTCCAAGGGATCCAGGTAACTATTCTCCCTGGTCTCGCCCTGTTGATTCAATTGTTTATGGTAGTATTGCCAATTACATCGAAAAAATAGTTGGCAAACTAGAGTCTGCTGTACGACGAAAAGATATATTCGATTTGGAGAAGCGTGTCAAGGTGGACTTCTTGTCCTGGAGAATGCCATCGACATCTACCGTTGTTAGTTCTGACATATTTGGTCGGGACGAAGACAAGAAGAACATAATCAAATTGCTATTAGATGATACCTGCGATGCTGAATCACCTGTGACTGTGGTTCCCATTGTGGGTATGGGTGGGATCGGAAAAACTACTTTGGCTCAACTCGTTTACAATGATGCCAAAGTCATAGAAAAATTTAACACTAGAGCATGGGTGTGTGTTGCTGAAAATCCTGATCCTGTTATTGTTACAAAGACAATAATAGGGGCACTAGATTCTTCTCCCCCTAACACGAATCATTTTGATTCACTTCAGAAAAATTTGATTGAAAAGTTGTCTGGAAAGACATTTTTGGTTGTTTTAGATGATGTCTGGGATCATGAACAAGCCACGTGGGAGGAATTTTTGAAACCTTTTCGACAAGGGAATAATGGGAGTAAAATTCTCTTAACAACTCGTAATGAAAAGGTGGCTTCTGTGTTTGCAGCTAACAATCTACACTACACACTAAGGTTATTGTTGGAGGAAGATTGTTGGTCGTTGTTTTTGAAACATTCGTCTATTTCTACTGATTCTAAAGAATATGCAACTCTAGAATTAGTTGGTAGAAAAATTGTTGAAAAGTGTAAGGGGTTACCATTGGCTGTGAAGACCCTTGGGGGGTTATTACGCAATAAATATAATGAAGGAGATTGGGAGAATATACTTAAAAGTGAAATTTGGGAACTCTCGGATAATGAAACCGAAGATCTTGTACAACCGAAGAAGAATGACACATTAGAAAATATCGGTTGTGCTTATTTTGATGAATTGGTTGCAAGGTCATTCCTTCAGCCTTCCAGTGATGATGAGAAGTTATTTGTAATGCATGATCTTATGCATGATCTAGCGAAAATTTTTGTTGGGAAATTCTATTTCACACTCAAAATTTTTGGCAATCCACACATAGACAAAAAAATTCGTCATTTGTCGTGTGCTAAAATTGATAAGGATGCCAACAAATCATTTCAAGAGCCCTATAATGGGGCTAAAGACATCAGAACATTTTTAGATTTTACTCACACTTTGAGTAGAAACAGAGTTGTTATTAAAAGTGATTTTTGGCTCCTACAACAATGGGAGTGTTTAAGAGTTTTTTCATCTGGCATCTTTGAAAGATTGCCTGATTCAATAGGTGAATTGATTCATTTGCGTTATTTAAATCTATCTAATTCACCAATCATGACCTTGCCCGAGTCAATATGTAAATTATACAATCTCCAAACTTTGAAGTTGAGGAATTGTCAATACCTAAAGATGCTTCCCCACCGCTTGCAAGATCTTGTGAGTCTGCGCCACCTTGACATTCAACTTTCTTTTGGTCTAAAAGAGATGCCGAAGGGAATGAGCAACTTAAAGCATCTAAGCTTCTTAAGCTGTTATATCGTTGGTGAGGAAGAAGACAACGGGATAGGAGAACTGGGAACACTGGACGAACTTCATGGCGAATTTTGCATTTTCAACTTGGAGAAGGTGAAGAATAGTGGTGAAGCTTTGGAGGCAAGGATGGGTAACAAGAAGCACATCAATACTTTATATTTGGAATGGCTTCCAAAAGGTGGCATTGTTGATGTTCAAACTAAAAGAGATATACTAGAGCAGTTAAAACCTCATGAACACTTGAAAGAGTTATCAATTTATGGCTATCCGGGTGAAACATTCCCAGATTGGTTAGGGCTCCCTGACTACTCCAAAATGACCAAATTGAGTCTGAGTCGTTGTATGAATTGTCGTGAGCTTCCTTCGCTGGGACAATTACCCTCTTTACAGGATCTGGGGATTTCTGAACTTGATGAGTTGGAGAAAATTGATTTAGAGTTTTTCAACAAAAAGAGTGGATCATTTCAGCAGGAGACACCCTTCAAGTCTCTTGAAAAACTGGAAATTAAGTCTATGTCTCGCTGGCAAGAGTGGCATTTTCCTCAAGAGTTTGATGGTTTTCCTCAGCTTAGAATCCTTTCAATAAGAAACTGTCCAGAGTTGAGGGGAGATCTGCCTGCTCACCTTCCGGCTCTGGAGAAACTTACTATTGTTTCATGTGAAAAACTTGCATGTTCTTGGCCGAGGGCTCCCAAGCTTTTTCAGTTATCTGTAACAGTAACAGCAGATGAGTTTTTTCGTTCAGAACCACACGGTGTATATATTTCATCAACCCAGCTGGCAATGCGCGCATTGGAGTGCTTGTCCCACATCCAACTGCCACGTGTCCAAAATGTGAATATCAGGAACTGTGAGTCAGCGATATCAATTTCATCAGATTATCTGCCAGCTTCATTGGAATATCTGACAATCTTTTGGTGTAAATTAACGATCTCAGAGCAACTGCATCATAAGTCGCTAACCGAGATAGATGTATCTATTGATTCACTGACGTCGTTTCCATTGGGGGACCTTCCAAATCTCAAGAAGCTCAAATTTCATGGTTGTACAGACATGGAATATGTTGAGATGGTACCACAGGGTCTTCCAAGTCTCCTTTTTTTGGAGATCACAAATTGCTACAGTTTACTATCCTTGCCGGCGCTAGGGACGATGACGCCCAGCCTAGAGATCCTAAAGATAAAGGATTGCCCAAAAATCGATTGTTTTGGTGAGGAGTGCCTCCCGCAGAGTTTGAAAGACCTTCGCGTGGATAATTGCCACAAACTTGTGAGTTGGATAGCATCAAATGGTTTGCAGAGTGAAGGCCTTACCTATCTTAAGCTTCGTTGTTGCGGAGGTGTAAAGTCGTTCCCGAGAGAGGGTTGCCTTCCACCTTCTCTTGAGTGTCTAGAATTGAATTGGTTACAAAATCTGGAGACGCTCGACTGCAAGGGGCTTCACCATCTTACCTCTCTCAAATATTTATCAATTGAATACTGTTACAACCTTGAGAATATCATACAAGAACATTTGCTAGCCTCCATACAAAATATCTACATAGGAAAAGAATGTCCTTTGAGGACTAAGCTGGAAGAGATGGAAGACCCACATATTCAATTCTTTTCAGACTCGGATAGTGATGATCGTTTTTATTTGTAA 3528 0.4036 MAAKLESGAYLSSFVDAISEKLYLLLEDDYVLEIDDSAPELLQRLYDCLCEVGPVLDDAELKQFRNDRVKKWLVDLQDALYMADDLVDELCTKAATATPRDPGNYSPWSRPVDSIVYGSIANYIEKIVGKLESAVRRKDIFDLEKRVKVDFLSWRMPSTSTVVSSDIFGRDEDKKNIIKLLLDDTCDAESPVTVVPIVGMGGIGKTTLAQLVYNDAKVIEKFNTRAWVCVAENPDPVIVTKTIIGALDSSPPNTNHFDSLQKNLIEKLSGKTFLVVLDDVWDHEQATWEEFLKPFRQGNNGSKILLTTRNEKVASVFAANNLHYTLRLLLEEDCWSLFLKHSSISTDSKEYATLELVGRKIVEKCKGLPLAVKTLGGLLRNKYNEGDWENILKSEIWELSDNETEDLVQPKKNDTLENIGCAYFDELVARSFLQPSSDDEKLFVMHDLMHDLAKIFVGKFYFTLKIFGNPHIDKKIRHLSCAKIDKDANKSFQEPYNGAKDIRTFLDFTHTLSRNRVVIKSDFWLLQQWECLRVFSSGIFERLPDSIGELIHLRYLNLSNSPIMTLPESICKLYNLQTLKLRNCQYLKMLPHRLQDLVSLRHLDIQLSFGLKEMPKGMSNLKHLSFLSCYIVGEEEDNGIGELGTLDELHGEFCIFNLEKVKNSGEALEARMGNKKHINTLYLEWLPKGGIVDVQTKRDILEQLKPHEHLKELSIYGYPGETFPDWLGLPDYSKMTKLSLSRCMNCRELPSLGQLPSLQDLGISELDELEKIDLEFFNKKSGSFQQETPFKSLEKLEIKSMSRWQEWHFPQEFDGFPQLRILSIRNCPELRGDLPAHLPALEKLTIVSCEKLACSWPRAPKLFQLSVTVTADEFFRSEPHGVYISSTQLAMRALECLSHIQLPRVQNVNIRNCESAISISSDYLPASLEYLTIFWCKLTISEQLHHKSLTEIDVSIDSLTSFPLGDLPNLKKLKFHGCTDMEYVEMVPQGLPSLLFLEITNCYSLLSLPALGTMTPSLEILKIKDCPKIDCFGEECLPQSLKDLRVDNCHKLVSWIASNGLQSEGLTYLKLRCCGGVKSFPREGCLPPSLECLELNWLQNLETLDCKGLHHLTSLKYLSIEYCYNLENIIQEHLLASIQNIYIGKECPLRTKLEEMEDPHIQFFSDSDSDDRFYL 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272049g00002 1175 Gene3D - 150 321 IPR027417 -
Stsc272049g00002 1175 SUPERFAMILY L domain-like 900 1144 - -
Stsc272049g00002 1175 Pfam Rx N-terminal domain 14 96 IPR041118 -
Stsc272049g00002 1175 Gene3D Ribonuclease Inhibitor 1038 1142 IPR032675 -
Stsc272049g00002 1175 Gene3D Ribonuclease Inhibitor 883 1037 IPR032675 -
Stsc272049g00002 1175 PRINTS Disease resistance protein signature 267 281 - -
Stsc272049g00002 1175 PRINTS Disease resistance protein signature 365 379 - -
Stsc272049g00002 1175 PRINTS Disease resistance protein signature 194 209 - -
Stsc272049g00002 1175 PRINTS Disease resistance protein signature 571 587 - -
Stsc272049g00002 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 402 IPR027417 -
Stsc272049g00002 1175 Pfam NB-ARC domain 173 393 IPR002182 GO:0043531
Stsc272049g00002 1175 FunFam Probable disease resistance protein At1g61300 154 321 - -
Stsc272049g00002 1175 Gene3D - 329 412 IPR042197 -
Stsc272049g00002 1175 SUPERFAMILY L domain-like 444 859 - -
Stsc272049g00002 1175 Gene3D Ribonuclease Inhibitor 486 872 IPR032675 -
Stsc272049g00002 1175 Gene3D - 15 140 - -
Stsc272049g00002 1175 PANTHER DISEASE RESISTANCE PROTEIN RP 71 850 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272049g00002 Stsc-Chr272049 11050 14909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272049g00002 192 772 WRKY Transcription Factor Family AT5G45050 23.375 8.06e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272049g00002 - - ahf:112708719 1458.74