Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272048g00006 ATGATTTTTATGTTTCAGCTGAGCAACTATTCATCAATGGAAGGTGTCCTATACTGTAAGCCTCATTACGAGCAGCTCTTCAAGGAGACAGGCTCGTTCACCAAGAATTTCCAGTCATCTGCTAAGTTAGCTGACAAGACAACTCCCGAGCTGACAAGGTCTCCCAGTAAAGCTGCAAGCATGTTTTCTGGAACACAAGAAAAGTGTGCTACCTGCGGGAAAACTGCTTATCCGTTGGAAAAGGTAACAGTGGAAGGGCAGGCATATCACAAATCATGTTTCAAGTGTTCTCACGGTGGCTGTCCGATAACACCGTCGAATTATGCAGCCCTCGAGGGTATTTTGTACTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGCAGCTATAACCATCTTATTAAGTCAGCATCGATCAAACGGGCTGCAACGGCGGCGACCTCTGTTCCAGATTCTTAA 462 0.4567 MIFMFQLSNYSSMEGVLYCKPHYEQLFKETGSFTKNFQSSAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAATAATSVPDS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272048g00006 153 ProSiteProfiles LIM domain profile. 67 127 IPR001781 -
Stsc272048g00006 153 PANTHER OS06G0237300 PROTEIN 6 72 - -
Stsc272048g00006 153 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 95 134 - -
Stsc272048g00006 153 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 37 - -
Stsc272048g00006 153 CDD LIM2_SF3 69 129 - -
Stsc272048g00006 153 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 61 94 - -
Stsc272048g00006 153 Gene3D Cysteine Rich Protein 63 133 - -
Stsc272048g00006 153 SMART lim_4 68 120 IPR001781 -
Stsc272048g00006 153 Pfam LIM domain 69 124 IPR001781 -
Stsc272048g00006 153 FunFam LIM domain and actin-binding 1 63 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272048g00006 Stsc-Chr272048 55628 57550 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc272048g00006 LIM 2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272048g00006 K09377 - gmx:100809121 287.345