Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272046g00008 ATGGGATGGTTTGTTCCTGGGGAAGTTGGTTTATACCCTAAGCATTTGATACCAAAAGCAATGAACGCATTTGAACTTGCTCTGCAATTTGCTATTTCTGTACTAGTTGTTGCTTGCCCGTGTGCTTTGGGTCTAGCAACACCAACTGCAGTCATGGTTGCTTCAGGCATAGGTGCTTCTCAAGGTGTTCTCATCAAGGGTGGAGATGCATTGGAAAAGGCACACAAGGTAAAAGTTGTTGTGTTTGACAAGACTGGGACACTTACAGTTGGAAAGCCGGTCGTTGTTAGTGCAGTGCTGTTTTCTGACTTTACTATGGAAGAGTTTTATCACATGACAATAGCAGTGGAGTCAAGTAGTGAGCACCCATTAGCAAAAGCTGTTGTTAATCATGCAAAGAAGCTGCGCAAGAAATTTGGTTCCAACAATGAGGAAGTGCCAGATGTGAAGGACTTTGAGGTGCTAGTGGGAGCTGGTGTGAGTGGAAAAGTTGGTGAAAGAACAATTCTAGTTGGAAACAAGAGACTTATGCATGCTTGTAATGTTCCCTTAAGTTCTGAGGTTGAGAGGTACATGTCTGAGAATGAAATTCTAGCCAGAACTTGTGTTCTGGTTTCAATTGACGGGAAGATTGCTGGAGCGTACTCTGTAACTGATCCATTAAAGCCCGAAGCTAAGCGTGTCATATCTTTTCTCCACTCCATGGGCATTTCAAGCATCATAGCGACCGGTGATAACCTTGCTACTGCAACTGCTATTGCAAATGAAGTTGGTATTGATGAGGTCTTCGCCGAGACGGATCCACTAGGGAAAGCTGATAAGGTGAAGGAGTTACAGATGAAAGGGATGACAGTGGCAATGGTGGGTGATGGAATTAATGACTCGCCGGCCTTGGTTGCCGCTGATGTTGGTATGGCAATAGGTGCTGGAACTGATGTAGCCATAGAAGCAGCTGATATAGTGCTTGTGAAAANNNNNNNNNNTTTGGAAGATGTGATCACAGCCATAGATCTTTCTAGAAAGACCATGTCACGAATCCGGCTCAACTATATCTGGGCTCTCGGCTATAACATTCTAGGCATGCCGGTTGCTGCCGGTGTCTTGTACCCGTTTACCGGAATAAGATTGCCCCCATGGCTTGCCGGTGCTTGCATGGCTGCTTCTTCTATTAGCGTGGTTTCTTCGTCTCTTCTGCTGCAATTGTATAAAAAACCCATTTGA 1221 0.4464 MGWFVPGEVGLYPKHLIPKAMNAFELALQFAISVLVVACPCALGLATPTAVMVASGIGASQGVLIKGGDALEKAHKVKVVVFDKTGTLTVGKPVVVSAVLFSDFTMEEFYHMTIAVESSSEHPLAKAVVNHAKKLRKKFGSNNEEVPDVKDFEVLVGAGVSGKVGERTILVGNKRLMHACNVPLSSEVERYMSENEILARTCVLVSIDGKIAGAYSVTDPLKPEAKRVISFLHSMGISSIIATGDNLATATAIANEVGIDEVFAETDPLGKADKVKELQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLVKXXXXLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPVAAGVLYPFTGIRLPPWLAGACMAASSISVVSSSLLLQLYKKPI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272046g00008 406 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 2 405 - -
Stsc272046g00008 406 NCBIfam HAD-IC family P-type ATPase 18 367 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc272046g00008 406 Pfam haloacid dehalogenase-like hydrolase 77 302 - -
Stsc272046g00008 406 ProSitePatterns E1-E2 ATPases phosphorylation site. 83 89 IPR018303 -
Stsc272046g00008 406 FunFam Probable copper-transporting ATPase HMA5 208 347 - -
Stsc272046g00008 406 NCBIfam heavy metal translocating P-type ATPase 26 399 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc272046g00008 406 SFLD C1.7: P-type atpase like 63 341 - -
Stsc272046g00008 406 PRINTS P-type cation-transporting ATPase superfamily signature 311 323 - -
Stsc272046g00008 406 PRINTS P-type cation-transporting ATPase superfamily signature 288 307 - -
Stsc272046g00008 406 PRINTS P-type cation-transporting ATPase superfamily signature 235 245 - -
Stsc272046g00008 406 PRINTS P-type cation-transporting ATPase superfamily signature 81 95 - -
Stsc272046g00008 406 PRINTS P-type cation-transporting ATPase superfamily signature 213 224 - -
Stsc272046g00008 406 SUPERFAMILY HAD-like 79 396 IPR036412 -
Stsc272046g00008 406 Gene3D - 92 221 IPR023299 GO:0000166
Stsc272046g00008 406 Gene3D - 72 340 IPR023214 -
Stsc272046g00008 406 SFLD p-type atpase 63 341 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272046g00008 Stsc-Chr272046 41830 44561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272046g00008 1 405 Primary Pumps ATPases AT1G63440 62.469 1.96e-172 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272046g00008 K17686 - gmx:100793894 674.47