Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272046g00007 ATGGAAGCAAATGGCGATCTTAAGATACCTCTGTTGCAGGCTTTACCAGAAGATGCCACAGTGAGGACGGTTATGTTTCAAATAGGTGGCATCAAGTGTGCATCTTGTGTAAATTCTGTTGAATCTGCAATTAAGGAGCTCCATGGAGTAAACAGCATCATGGTTTCGCCGATTGACGGCCGAGCTATAATAAAATATTCTCCTAAGTTTATCACTGCGAAAAAAATAAAAGAAGCAATAGAAGACAGTGGCTTTGGAGTTGAAGAGCTTCAGGAGCAAGAGATATCGGTATGCCGAGTAAGGATTAAAGGGATGGCATGCACAAGCTGCTCTGAGTCTGTTGAGAAGGCACTTCAGATGATTGATGGAGTGAAAAAGGCAACTGTTGGTCTGGCTTTAGAGGAGGCCAAAGTGTACTTTGATCCTAACCTCGCCGATGCTAACAAGATAGTTGAAGCTATAGAGGATGCTGGTTTCGGAGCAGAACTTATTAGCTCTGCTAATGATGCGAACAAAGTGCATCTAAAAGTTGAAGGGGTTGATTCTGTCGAAGATGTAAATATTGTAATGTCTTCGCTTGAGTTAGCGGCAGGTGTGAATCATGTTGAATTCAATTTGAAAGAGCATATAGCTACAGTTAGCTATGAACCGGATATTACGGGTCCAAGATCTCTTATTCACTGCATTCAGACAGCTAGCTCTGGCACCAAGATGTACCAGGCATCCTTGCACACAACCTCAGGAAAAAGAGAAAGGGATAAGGTGGATGAAATTCGTAGTTACAGGGACCAATTTTTGTTCAGCTGCTTATTTTCGGTTCCTGTGTTTTTATTTGCCATGGTGCTTCCCATGCTTCCTCCCTATGGAAACTGGTTGAACTATAAGATCCACCATATGCTGACTCTTGGGCTGTTTCTAAGATGGATACTTAGTACACCTGTGCAGTTCATAGTTGGCAAAAGGTATTACTAA 972 0.4228 MEANGDLKIPLLQALPEDATVRTVMFQIGGIKCASCVNSVESAIKELHGVNSIMVSPIDGRAIIKYSPKFITAKKIKEAIEDSGFGVEELQEQEISVCRVRIKGMACTSCSESVEKALQMIDGVKKATVGLALEEAKVYFDPNLADANKIVEAIEDAGFGAELISSANDANKVHLKVEGVDSVEDVNIVMSSLELAAGVNHVEFNLKEHIATVSYEPDITGPRSLIHCIQTASSGTKMYQASLHTTSGKRERDKVDEIRSYRDQFLFSCLFSVPVFLFAMVLPMLPPYGNWLNYKIHHMLTLGLFLRWILSTPVQFIVGKRYY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272046g00007 323 FunFam ATPase copper transporting beta 19 93 - -
Stsc272046g00007 323 FunFam Copper-transporting ATPase HMA5 95 166 - -
Stsc272046g00007 323 CDD HMA 25 88 IPR006121 GO:0046872
Stsc272046g00007 323 CDD HMA 100 162 IPR006121 GO:0046872
Stsc272046g00007 323 Gene3D - 96 167 - -
Stsc272046g00007 323 ProSitePatterns Heavy-metal-associated domain. 102 131 IPR017969 GO:0046872
Stsc272046g00007 323 ProSiteProfiles Heavy-metal-associated domain profile. 96 162 IPR006121 GO:0046872
Stsc272046g00007 323 ProSiteProfiles Heavy-metal-associated domain profile. 22 88 IPR006121 GO:0046872
Stsc272046g00007 323 SUPERFAMILY HMA, heavy metal-associated domain 168 235 IPR036163 GO:0046872
Stsc272046g00007 323 NCBIfam copper ion binding protein 25 87 IPR006122 GO:0005507
Stsc272046g00007 323 NCBIfam copper ion binding protein 100 160 IPR006122 GO:0005507
Stsc272046g00007 323 Pfam Heavy-metal-associated domain 26 85 IPR006121 GO:0046872
Stsc272046g00007 323 Pfam Heavy-metal-associated domain 99 159 IPR006121 GO:0046872
Stsc272046g00007 323 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 18 323 - -
Stsc272046g00007 323 Gene3D - 168 243 - -
Stsc272046g00007 323 Gene3D - 17 88 - -
Stsc272046g00007 323 ProSiteProfiles Heavy-metal-associated domain profile. 171 237 IPR006121 GO:0046872
Stsc272046g00007 323 PRINTS Copper-transporting ATPase 1 signature 49 72 - -
Stsc272046g00007 323 PRINTS Copper-transporting ATPase 1 signature 120 141 - -
Stsc272046g00007 323 PRINTS Copper-transporting ATPase 1 signature 78 98 - -
Stsc272046g00007 323 PRINTS Copper-transporting ATPase 1 signature 23 48 - -
Stsc272046g00007 323 SUPERFAMILY HMA, heavy metal-associated domain 94 166 IPR036163 GO:0046872
Stsc272046g00007 323 SUPERFAMILY HMA, heavy metal-associated domain 20 92 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272046g00007 Stsc-Chr272046 39494 40901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272046g00007 18 323 Primary Pumps ATPases AT1G63440 40.064 2.51e-76 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272046g00007 K17686 - gmx:100793894 502.286