Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272044g00005 ATGATAGATGTAAAGCCGCGTAGATTATTAACCTTCTTGTGCAATGTCCTCGGAATCGGAATCGGACCGGTGTTGGCTGATTTCTCTAAAGGCCATGCACTGGAAAGTTCCCCTCTATTAAAGGAGGGGCAAGGGCAGGGGCAAGGGCAAGGGCAAGGGCAGGGGCAAGGGCAAGGGCAAGGGCAGGGTCAGGGGATGGATTCGCATTCCAATTCGAATTGTCCCTCTGGAAATCCTCTCGTGCCGTTTGAAATATGTGACAACAGTAAACCTCATCATGAACGTCGGAGCCGCTTAAAAAGCATGCAGTTTGATGATGGCTTCCCTTTGCATGAAGACAATGCTAGGTCTGTGTACATAAACGATCCCAAGAGGACAAACCAGAACTACGAGTTCACAGGGAACGAGATCAGAACAAGTAGCTACACTTTGATCACTTTCTTACCTAAGAATCTCTTCATTCAGTTCCATAGAGTTGCTTATCTCTATTTCCTTGCCATCGCCGCTCTCAACCAGCTTCCTCCCTTGGCTGTCTTTGGGAGAACAGCCTCTCTCTTCCCTCTCCTCTTCGTCCTCTGTGTCACCGCCATCAAGGATGGCTACGAGGATTGGCGCAAGCACCGCTCCGATCGATTCGAAAACAACAGAGACTGCCTCGTGCTTCAGGACCATGGAATCTTCCTCCCCAAGAAATGGAACAGAATACAGGCTGGCGACGTGGTTAAGATCTCCGCCGACGAGATGATCCCGGCCGACATAGTCTTGCTAGGGACGAGTGACAAGAGCGGGATTGCCTACATTCAGACCATGAATCTAGACGGTGAATCAAACCTCAAGACAAGGTTTGCGAGGCAAGAAACCGTTCCGGCGGTGACGTCAGAATCGTGTGCAGTCACGGGAGTCATCAGATGCGAGAAGCCTAACAGGAACATCTACGAGTTCACAGCAAACATGGAGTTCAACGGGACCAAGATCCCGCTGAACCAGACCAACATCGTGCTTCGCGGTTGCGTCTTGAAGAACACTGACTGGCTAATCGGAGTGGTGGTGAGTGCCGGCCAAGAAACAAAGGCAATGCTAAACAGTGCAGCTGCTCCTCCCAAGAGAAGCAAGCTGGAGATTTACATGAATAGAGAAACCGTTTGGCTTTCGGTTTTCCTTTTTGTTATGTGCTCCGCCGTGGCCCTTGGGATGGGTTTGTGGCTCCGCCGCCACAAGCACCAGCTGGAGACCTTGCCTTATTACAGGAGGACATACCTCAACCGTGGACCCGAAACAGGAAAGGATCATAAATATTACGGCATACCGATGGAAATACTCTTCTCTTTTCTCAGTTCCGTTATAGTCTTTCAGATCATGATTCCGATTTCTCTCTACATCACAATGGAGTTGGTTCGTGTGGGACAGTCCTACTTCATGGTGGAAGACATGGATATGCATGATTCTTCCTGTGGATCAAGGTTCCAGTGCAGGTCCTTCAACATAAACGAAGATTTAGGTCAGATACGTTATATATTCTCTGATAAGACTGGAACTCTCACAGAAAACAAAATGGAGTTTCGGAAAGCCAGTGTGTTTGGAAAGAATTACGGGAACTCCATGCCCGTGCCTCCTGATACAGTTAAAAGTAAACGAAGATGGAAGCTCAAATCTGAAATTCCCGTTGATTCTGATCTGATGGCGTTGCTACAAAAAGAAAAAGATTCAAGTAGTGAGGAGAGAGTTGCAGCTCACGATTTTTTCATCACGCTGACTGCATGCAACACTGTGATCCCGGTTGTTAGTGGCAATAGGCCTTGCAGTTATGAAACAAAGGAAGACGATGGTGTAGTCAGCATTGATTACCAGGGAGAGTCTCCCGATGAACAAGCTTTGGTTTCTGCTGCCTCTGCATATGGTTACACTCTTTTTGAGAGAACAACTGGACATCTTGTTATTGACAAAAATGGTGAAAAAATCAGACTGGAAGTGCTGGGGATGCATGAGTTTGACAGTGTGCGGAAGAGAATGTCTGTTGTTATTCGGTTTCCGAACAATGCTGTGAAGGTGTTAGTGAAAGGCGCGGACACTTCAATGCTTAGAATCTTGGCGAATGATGATGACATTGTTTGGCACGCCACACAGGATCATCTGAATGAGTATTCATTGGAAGGTTTGCGAACACTTGTGTTGGCCTCAAGGGATCTCTCAGAGGCAGAGCTTGAGGAGTGGCAAAGCGCCTATTTAGAAGCCAGCACTGCATTGTTTGACAGAGCTACCAAACTACGCTATGCAGCATCCCTCATTGAATGCAACTTGAAGCTGCTTGGAGCAACCGGAATTGAGGACAGGCTGCAAGAGGGTGTCCCTGATGCTATTGAGTGCCTCAGGCAAGCTGGAATTAAGGTCTGGGTTCTAACCGGCGACAAGCAAGAAACCGCCATTTCGATAGGTGTCTCTTGCAAACTTCTTACTCCAGATATGGAAAAGATTATCATAAATGCCACTTCTGAGGCTCATTGCAGAGATCTGTTGGTTGAAGCTAAAGCCAGATATGGTGTGAGATCTTCCGGTAAAGGACATGGGAATGGCAAGCACAAAACCATTGTTGATCCAGGAATGGAAGAAGATGATACAGCCCCATTGGCACTCATAATTGATGGCACCAGCTTGGTTTATATTTTGGAGAGGGAAACAGAATCAGAGGCAAGTCTCTTCGACATTGCAACTGCCTGTAGGGTTGTGATATGCTGCCGGGTTGCACCCTTGCAAAAAGCAGGAATTGTTAATCTTATTAAGAGCCGCACAGATGATATAACACTAGCCATAGGGGACGGTGCCAATGATGTGTCGATGATCCAAATGGCAGACGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCAGCAGATTTTGCAATGGGTCAATTTCAGTTCTTGAGAAAACTACTACTGGTTCATGGTCACTGGAATTATCAGCGTCTTGGATATCTAGTTCTTTACAACTTCTACCGCAATGCTGTCTTTGTTTTCATGCTATTTTGGTATATATTGTGCACTGCTTTTTCTACAACTTCTGCATTGACAGAGTGGAGTTGTGTATTATACTCTGTGATTTACACATCAATACCTACTGTGATTGTTGGTGTTATGGACAAAGACTTGAGTCAGCAGACACTGCTGCAGTATCCGAAGCTGTATGGTGCTGGTTACCGGCAAGAGGCTTACAATATTCGATTGTTTTGGTTAACAATGATTGACACACTATGGCAGAGCCTTGTTGTGTTCTTGATTCCTGTACTGACCTATAAGAACAGCTCAATTGATATATGGAGCCTGGGCAGCTTGTGGACAATTGCGATTGTTATCCTTGTAACGGTGCATTTGGCTATGGATGTTAATGGTTGGATATTGATCATGCATCTTGCTGTATGGGGTTCAATTTTCATTACATATGGCTGCTTGCTAGTGTTGGATTCTATACCTCTCCTTCCGAATTACTGGACTATTTACCATCTAGCATGCACCCCTACGTATTGGATAACAATTTTGCTAGTAACAGTTGTGGCATTGCTGCCTCGATTTACTTGCAAAGTTGCTTCCCAAGTCCTATGGCCTTCAGATATTCAGATAGCTAGAGAAGCTGAGGCAAGAAGTAAAAAACATGGAGATCGGTAG 3669 0.4614 MIDVKPRRLLTFLCNVLGIGIGPVLADFSKGHALESSPLLKEGQGQGQGQGQGQGQGQGQGQGQGMDSHSNSNCPSGNPLVPFEICDNSKPHHERRSRLKSMQFDDGFPLHEDNARSVYINDPKRTNQNYEFTGNEIRTSSYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTASLFPLLFVLCVTAIKDGYEDWRKHRSDRFENNRDCLVLQDHGIFLPKKWNRIQAGDVVKISADEMIPADIVLLGTSDKSGIAYIQTMNLDGESNLKTRFARQETVPAVTSESCAVTGVIRCEKPNRNIYEFTANMEFNGTKIPLNQTNIVLRGCVLKNTDWLIGVVVSAGQETKAMLNSAAAPPKRSKLEIYMNRETVWLSVFLFVMCSAVALGMGLWLRRHKHQLETLPYYRRTYLNRGPETGKDHKYYGIPMEILFSFLSSVIVFQIMIPISLYITMELVRVGQSYFMVEDMDMHDSSCGSRFQCRSFNINEDLGQIRYIFSDKTGTLTENKMEFRKASVFGKNYGNSMPVPPDTVKSKRRWKLKSEIPVDSDLMALLQKEKDSSSEERVAAHDFFITLTACNTVIPVVSGNRPCSYETKEDDGVVSIDYQGESPDEQALVSAASAYGYTLFERTTGHLVIDKNGEKIRLEVLGMHEFDSVRKRMSVVIRFPNNAVKVLVKGADTSMLRILANDDDIVWHATQDHLNEYSLEGLRTLVLASRDLSEAELEEWQSAYLEASTALFDRATKLRYAASLIECNLKLLGATGIEDRLQEGVPDAIECLRQAGIKVWVLTGDKQETAISIGVSCKLLTPDMEKIIINATSEAHCRDLLVEAKARYGVRSSGKGHGNGKHKTIVDPGMEEDDTAPLALIIDGTSLVYILERETESEASLFDIATACRVVICCRVAPLQKAGIVNLIKSRTDDITLAIGDGANDVSMIQMADVGVGICGQEGRQAVMAADFAMGQFQFLRKLLLVHGHWNYQRLGYLVLYNFYRNAVFVFMLFWYILCTAFSTTSALTEWSCVLYSVIYTSIPTVIVGVMDKDLSQQTLLQYPKLYGAGYRQEAYNIRLFWLTMIDTLWQSLVVFLIPVLTYKNSSIDIWSLGSLWTIAIVILVTVHLAMDVNGWILIMHLAVWGSIFITYGCLLVLDSIPLLPNYWTIYHLACTPTYWITILLVTVVALLPRFTCKVASQVLWPSDIQIAREAEARSKKHGDR 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272044g00005 1222 PRINTS P-type cation-transporting ATPase superfamily signature 810 820 - -
Stsc272044g00005 1222 PRINTS P-type cation-transporting ATPase superfamily signature 936 955 - -
Stsc272044g00005 1222 PRINTS P-type cation-transporting ATPase superfamily signature 506 520 - -
Stsc272044g00005 1222 SFLD C1.7: P-type atpase like 490 987 - -
Stsc272044g00005 1222 Pfam E1-E2 ATPase 234 464 - -
Stsc272044g00005 1222 MobiDBLite consensus disorder prediction 39 74 - -
Stsc272044g00005 1222 FunFam Phospholipid-transporting ATPase 190 361 - -
Stsc272044g00005 1222 SUPERFAMILY Calcium ATPase, transduction domain A 223 358 IPR008250 -
Stsc272044g00005 1222 Pfam Phospholipid-translocating ATPase N-terminal 118 183 IPR032631 -
Stsc272044g00005 1222 Pfam Phospholipid-translocating P-type ATPase C-terminal 964 1204 IPR032630 -
Stsc272044g00005 1222 FunFam Phospholipid-transporting ATPase IC 503 515 - -
Stsc272044g00005 1222 CDD P-type_ATPase_APLT_Dnf-like 134 1096 - -
Stsc272044g00005 1222 Gene3D - 766 976 IPR023214 -
Stsc272044g00005 1222 Pfam Cation transport ATPase (P-type) 618 693 - -
Stsc272044g00005 1222 SUPERFAMILY Calcium ATPase, transmembrane domain M 132 1198 IPR023298 -
Stsc272044g00005 1222 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 512 782 IPR023299 GO:0000166
Stsc272044g00005 1222 MobiDBLite consensus disorder prediction 41 74 - -
Stsc272044g00005 1222 ProSitePatterns E1-E2 ATPases phosphorylation site. 508 514 IPR018303 -
Stsc272044g00005 1222 FunFam Phospholipid-transporting ATPase 765 976 - -
Stsc272044g00005 1222 NCBIfam HAD-IC family P-type ATPase 902 1022 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc272044g00005 1222 Gene3D - 191 363 - -
Stsc272044g00005 1222 NCBIfam phospholipid-translocating P-type ATPase 132 1211 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc272044g00005 1222 SUPERFAMILY HAD-like 501 982 IPR036412 -
Stsc272044g00005 1222 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 109 1214 - -
Stsc272044g00005 1222 SFLD p-type atpase 490 987 IPR044492 -
Stsc272044g00005 1222 Gene3D - 610 742 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272044g00005 Stsc-Chr272044 36350 40730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272044g00005 110 1213 Primary Pumps ATPases AT5G04930 56.318 0.0 1260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272044g00005 K14802 - gmx:100812459 1750.72