Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272043g00003 ATGGACACAGCTCAGTGGGCACAGCATGGAATTGGAGTGGTTAAAGCAATGGAAGGTTCTTCATGTCCATCTTCAACAAAAGCGGGATGTTCATCAACATCATCTTCGTCGGCGTTGGAGAGAAGAACAAGGCCAGTGAAGGATCAAGCACTCAACTGTCCACGGTGCAACTCAACCAACACAAAATTCTGTTACTACAACAATTACAGCCTCTCTCAGCCACGCTATTTCTGCAAAACCTGCCGAAGGTATTGGACTGAAGGCGGTTCCTTGAGAAACGTTCCTGTTGGCGGCGGTTCCAGAAAGAACAAGAGAACCGCCACACCAACACCACCACCACCACCACCTTCTTCATCATCACCATCACTAACAACAACCAATCTTATTAAGAACCCAAAGATCATCCACCATCATCAAGGACAAGATCTTAACTTAGCATATCCACCGCCTCCGCCACACGAGGATTCTGCTACGGAGTTTCTGAGAAGTAAGATCAATACTTCAAGGGGGTTGAATTCTTTTATGCCCATGTCGATTATCTCGGATTCTACAATGTATAGTACGGCAGGGTTTGGTGCTCCGATGCAAGAGTTTCTTAAATCTGGTGGTGGTGGTGGACTTAACTTTAGTCTTGAACAAGGCTTTGAGAATGGTGGTGGTGGCGGTTTTAGCGGCGGTTTACAAGGGATTCATCATGGTGAAGAAGAGGGGGGTGCAAGGGTTTTGTTTCCTTCTTCAGAAGATTTGAAGCATCATCAAGTAGAGGTTACAACTACAACGGATTTCATGGAGCAGAATAACAATAGAGCTGCTGATTCAAGTGCTGCTGCTGGGTTTTGGAATGGCATGTTGGGTGGAGCTTCATGGTAG 870 0.4621 MDTAQWAQHGIGVVKAMEGSSCPSSTKAGCSSTSSSSALERRTRPVKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRTATPTPPPPPPSSSSPSLTTTNLIKNPKIIHHHQGQDLNLAYPPPPPHEDSATEFLRSKINTSRGLNSFMPMSIISDSTMYSTAGFGAPMQEFLKSGGGGGLNFSLEQGFENGGGGGFSGGLQGIHHGEEEGGARVLFPSSEDLKHHQVEVTTTTDFMEQNNNRAADSSAAAGFWNGMLGGASW 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272043g00003 289 MobiDBLite consensus disorder prediction 19 44 - -
Stsc272043g00003 289 MobiDBLite consensus disorder prediction 92 126 - -
Stsc272043g00003 289 Pfam Dof domain, zinc finger 48 105 IPR003851 GO:0003677|GO:0006355
Stsc272043g00003 289 MobiDBLite consensus disorder prediction 19 40 - -
Stsc272043g00003 289 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Stsc272043g00003 289 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Stsc272043g00003 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 200 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272043g00003 Stsc-Chr272043 25590 27488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272043g00003 41 289 C2C2-Dof Transcription Factor Family AT3G61850 41.727 4.89e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc272043g00003 zf-Dof 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272043g00003 - - adu:107460523 347.821