Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272041g00005 ATGGGAAGCGAAATTGCTGATCCTATTCCAGAATACATCTACCGCTGCAAGAAGGCCTCTCTCCTCAACTCCCTCAAAGACGAGTTGCACAACACTCCCCTCATCCACGAACACATCCTCCACAAACTCGAGTTTCTAGAAGAACTCGATTACCGCATCGGTTCTCCCGTTTCCCCTTCCTTCTCCGCCGCCTACTGTGCCGTCGCTGTAGAGTGCACCCTCATGCACCTTAGCGCGCACTCTTCCGATGACGTCATCTCCACCGACTCTGCCTATGTCAAAGCCATAAACCGCATTTGGCGCGACCACATTTCTTACATGGAATCCTCTTCCTCCTCCGGCGTCGGGTGCCAGCTGTACAATGCGGAGCTGAAGCGCTGGGGCAATGAAATCGAGGCTTCGCTTTCGGATCCCTGTGTTTTGAAGCGGTTGGAAAGCTACAATAGTAGGGAAGATGCCATTTCCAAGCTTAAGGCTTATTTGGTTGAAGCCTCACAAGATTTGGCTGCTTATTTCCTTGCGATAGCTTTCTTTACTGCTTCACACGCTGATACTTGTCCTGCTTCTGTTGAGTCTGTTCGCCATAAACAGGAAGCTAGTAAGCTTGCTAGTCGCGCTGTACGGCTCCACCTCGCCCTCCAAAGAGACTTACCTTTCGATACAGATTTACGTGATCAATATGTTTTCGCAGCTGCTTCTGCTGAGGAGTGTAATGAATCAGAACGGGTTTTGCATGAAGGAGCATCAGATCATGCCACCAAGATTCAATTACCTAGCCCCAAGGGATGGAAAATCTCTCCATTGAGAAAATATGAAGAACGAAACATAATAATGAGGAGAAAAAAGAAAAGATGGAGTGAGTTGGAAGTAGAGACACTGAGGTCTGCTGTGAATCAGCATGGTGAAGGAAACTGGAAGGTGATCCTTAGTGCTCACATGGATGTATTTGAAGAGAGAACTGACGTTGATTTGAAGGATAAATGGAGAAACATCAAGCGTCATCGAGCTAATTAG 1014 0.4753 MGSEIADPIPEYIYRCKKASLLNSLKDELHNTPLIHEHILHKLEFLEELDYRIGSPVSPSFSAAYCAVAVECTLMHLSAHSSDDVISTDSAYVKAINRIWRDHISYMESSSSSGVGCQLYNAELKRWGNEIEASLSDPCVLKRLESYNSREDAISKLKAYLVEASQDLAAYFLAIAFFTASHADTCPASVESVRHKQEASKLASRAVRLHLALQRDLPFDTDLRDQYVFAAASAEECNESERVLHEGASDHATKIQLPSPKGWKISPLRKYEERNIIMRRKKKRWSELEVETLRSAVNQHGEGNWKVILSAHMDVFEERTDVDLKDKWRNIKRHRAN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272041g00005 337 Gene3D - 275 337 - -
Stsc272041g00005 337 PANTHER MYB TRANSCRIPTION FACTOR 9 194 - -
Stsc272041g00005 337 CDD SANT_TRF 283 333 - -
Stsc272041g00005 337 SMART sant 281 334 IPR001005 -
Stsc272041g00005 337 SUPERFAMILY Homeodomain-like 278 332 IPR009057 -
Stsc272041g00005 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 277 336 IPR017930 -
Stsc272041g00005 337 Pfam Myb-like DNA-binding domain 282 332 IPR001005 -
Stsc272041g00005 337 ProSiteProfiles Myb-like domain profile. 277 332 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272041g00005 Stsc-Chr272041 37749 41653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272041g00005 248 331 Single Myb Histone (SMH) Gene Family AT1G15720 39.286 4.34e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc272041g00005 Myb_DNA-binding 2.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272041g00005 - K11111 adu:107474354 244.973