Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272040g00013 ATGGCTTCAAGCACTCTTAGCAAACAAAAGAATCCTTGTTTTTCTTCTGAGTCATCATATTCATCATCAACAACAACATGGACAGCAAAAGAAAATAAGCTGTTTGAGAAGGCACTTGCAAAATTTGATAAGGATACAGCAGATAGGTGGCAGAATGTTGCAAAAGCAGTTGGTGGAAATAAATCTGCTGATGAAGTTAAGAGACACTATGAAATCCTCTTAGAAGATCTCAGACACATTGAGTCTGGTCATATTCCCATTCCTAACTACAAATCCACGCCAGCTACCACCACCAATCTTGATGAAGAAGAGAGGCTTTTGAAGTATCTCAAGCTGAATTAG 342 0.386 MASSTLSKQKNPCFSSESSYSSSTTTWTAKENKLFEKALAKFDKDTADRWQNVAKAVGGNKSADEVKRHYEILLEDLRHIESGHIPIPNYKSTPATTTNLDEEERLLKYLKLN 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272040g00013 113 MobiDBLite consensus disorder prediction 1 26 - -
Stsc272040g00013 113 SMART sant 23 76 IPR001005 -
Stsc272040g00013 113 Pfam Myb-like DNA-binding domain 26 70 IPR001005 -
Stsc272040g00013 113 ProSiteProfiles SANT domain profile. 22 78 IPR017884 -
Stsc272040g00013 113 FunFam Transcription factor SRM1 19 87 - -
Stsc272040g00013 113 SUPERFAMILY Homeodomain-like 25 82 IPR009057 -
Stsc272040g00013 113 Gene3D - 18 87 - -
Stsc272040g00013 113 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 17 101 IPR044636 GO:0003700
Stsc272040g00013 113 ProSiteProfiles Myb-like domain profile. 27 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272040g00013 Stsc-Chr272040 67939 69993 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc272040g00013 Myb_DNA-binding 9.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272040g00013 - - ahf:112788989 174.481