Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272040g00012 ATGTTGCATTGCGTAAACATGACTGTGCTGGAGAGGCAGCAAGCAAGAAGCAGGAAATGCCATCAACAAGATCAAGATCAAGATCAAGATTACCAACGGTCATCATTGTTCGACGTGTTCTCTTCTTCCATCACAATGGACGGTTACGATGATTCCTCCCTTCACATGCCTATCATGCCTCCTCCTGCTCCTGCTCCTGCTCCTTCTTCTTCTTCCGCACTTTCAAGGACTACTACTTCTATCACTCCACGTGTCGCAACCTCATTGGCTTCTCCCACACTCGGCAAGAAGAGAAAACCTCTAACTCAAAAGGTGGTTGCTGGTGGTGGCGGTGCTGAACAACAGAGTGAGAACAAGAAGGACAAAAAGGTCAAAGTGAGTGGCGAAGAAGACTCGTCTAAAATCACTGAGCAAACCAACAAGGAGGAAGTAGCTTCCGCTGAGAATTCCAAAGGATCTTCCGAGGCTCAGAATCACAAACCTGACTACATTCATGTCCGAGCTCGCCGCGGCCAAGCCACCGATAGTCACAGCCTTGCTGAAAGAGTTAGGAGGGAAAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTACCTGGTTGCAACAAGATTACAGGGAAAGCTGGAATGCTTGACGAAATCATAAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCTATGAAATTAGCTGCTGTAAACCCAAGGCTTGACCTCAACATTGATGATCTCTTTGCCAAAGAGGTGTTTCCTGCTTGTGCTCCAAATTTTCAAAGCATTGGAATGGCATCATCATCAGACATGAGTAATAACCCTGCTGCTGCTGCTGCTGCATATCTTGATTTCAATTCAGTTCAACAACTTGTGTCATGTTCCAATGGATTAATCAACAACATTGGCATGAGTATGAACCCTTCACCAGACATGGGGCTTAGGAAAACCATTGCTACACCTCACTCTGTGTCTTTACCAGAAACATTTCTTGACTCATCATCTTGTTTCACTCAAGCTTTACCTCCTTCAATTTGGGAAGGTGAATTCCAAATCCAAAACCTTTACAATGTGGCTTTTGATCAACCTAGAGCATCATCTTTTCCACCTTCTCACCCATTTACAGGTTTAGTGGAAGCTAGCAATCTAAAGATGGAGATGGAGATGTAG 1170 0.441 MLHCVNMTVLERQQARSRKCHQQDQDQDQDYQRSSLFDVFSSSITMDGYDDSSLHMPIMPPPAPAPAPSSSSALSRTTTSITPRVATSLASPTLGKKRKPLTQKVVAGGGGAEQQSENKKDKKVKVSGEEDSSKITEQTNKEEVASAENSKGSSEAQNHKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLNIDDLFAKEVFPACAPNFQSIGMASSSDMSNNPAAAAAAYLDFNSVQQLVSCSNGLINNIGMSMNPSPDMGLRKTIATPHSVSLPETFLDSSSCFTQALPPSIWEGEFQIQNLYNVAFDQPRASSFPPSHPFTGLVEASNLKMEMEM 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272040g00012 389 FunFam Basic helix-loop-helix transcription factor 169 241 - -
Stsc272040g00012 389 CDD bHLH_AtBPE_like 162 247 - -
Stsc272040g00012 389 MobiDBLite consensus disorder prediction 14 28 - -
Stsc272040g00012 389 MobiDBLite consensus disorder prediction 14 33 - -
Stsc272040g00012 389 MobiDBLite consensus disorder prediction 51 159 - -
Stsc272040g00012 389 SMART finulus 178 228 IPR011598 GO:0046983
Stsc272040g00012 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
Stsc272040g00012 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 240 IPR036638 GO:0046983
Stsc272040g00012 389 MobiDBLite consensus disorder prediction 139 157 - -
Stsc272040g00012 389 MobiDBLite consensus disorder prediction 115 138 - -
Stsc272040g00012 389 MobiDBLite consensus disorder prediction 69 89 - -
Stsc272040g00012 389 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 42 273 IPR024097 GO:0006355
Stsc272040g00012 389 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Stsc272040g00012 389 Gene3D - 169 243 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272040g00012 Stsc-Chr272040 46952 49401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272040g00012 1 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 39.691 8.63e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272040g00012 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272040g00012 - - gmx:100815751 361.303