Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272039g00012 ATGGCAACAAATGGTTCCAATGATGATCTCAAATATGATCAAAATCAAGTCTCAAACCTCCCCAACAATTCCAATGTGCTAGAATTTGTGAAGTTATCCAATGATGGTTTAATCCGTGGTTCCAAAGTGGAAGAACTTGATCTTTTCCACATAGAACACAAGCCAACAACACCACCAAACAATAATATAGAAGTAAAGCCCTTCTCATGTAACTTTTGTAAGAAGGAGTTCACTAGTTCACAAGCATTAGGAGGGCATCAAAACGCACACAAACAAGAGCGCGCGATAGCGAAACGTCGCCAAGAGATTGATGCTGGCCATGGCCATAGTGGTGGTCTTTTTTGTTACCCATATTCCTTTTCCTACTACCACCATTTCCCTAGCTTTTCCACACACCCTTTGTCTCATAATAATAGCAATACTAATAGGGCACTTGGAGTGAGGTTGGAATCCAAGATTCATAAGCCAAATAATTGGAATAGTGGAATCATGATGAGACATGCCCATGAAACCAACATGCAAGAAGACCCCTCTAGCTCTATGCTTGATTTGTCACTTAAGCTTTAA 567 0.4039 MATNGSNDDLKYDQNQVSNLPNNSNVLEFVKLSNDGLIRGSKVEELDLFHIEHKPTTPPNNNIEVKPFSCNFCKKEFTSSQALGGHQNAHKQERAIAKRRQEIDAGHGHSGGLFCYPYSFSYYHHFPSFSTHPLSHNNSNTNRALGVRLESKIHKPNNWNSGIMMRHAHETNMQEDPSSSMLDLSLKL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272039g00012 188 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 10 170 IPR044246 GO:0009788
Stsc272039g00012 188 Pfam C2H2-type zinc finger 68 92 - -
Stsc272039g00012 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Stsc272039g00012 188 SUPERFAMILY beta-beta-alpha zinc fingers 65 95 IPR036236 -
Stsc272039g00012 188 Gene3D Classic Zinc Finger 46 109 - -
Stsc272039g00012 188 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272039g00012 Stsc-Chr272039 61812 62378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272039g00012 44 160 C2H2 Transcription Factor Family AT5G10970 40.496 1.62e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272039g00012 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272039g00012 - - ahf:112786570 213.001