Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc272039g00012 | ATGGCAACAAATGGTTCCAATGATGATCTCAAATATGATCAAAATCAAGTCTCAAACCTCCCCAACAATTCCAATGTGCTAGAATTTGTGAAGTTATCCAATGATGGTTTAATCCGTGGTTCCAAAGTGGAAGAACTTGATCTTTTCCACATAGAACACAAGCCAACAACACCACCAAACAATAATATAGAAGTAAAGCCCTTCTCATGTAACTTTTGTAAGAAGGAGTTCACTAGTTCACAAGCATTAGGAGGGCATCAAAACGCACACAAACAAGAGCGCGCGATAGCGAAACGTCGCCAAGAGATTGATGCTGGCCATGGCCATAGTGGTGGTCTTTTTTGTTACCCATATTCCTTTTCCTACTACCACCATTTCCCTAGCTTTTCCACACACCCTTTGTCTCATAATAATAGCAATACTAATAGGGCACTTGGAGTGAGGTTGGAATCCAAGATTCATAAGCCAAATAATTGGAATAGTGGAATCATGATGAGACATGCCCATGAAACCAACATGCAAGAAGACCCCTCTAGCTCTATGCTTGATTTGTCACTTAAGCTTTAA | 567 | 0.4039 | MATNGSNDDLKYDQNQVSNLPNNSNVLEFVKLSNDGLIRGSKVEELDLFHIEHKPTTPPNNNIEVKPFSCNFCKKEFTSSQALGGHQNAHKQERAIAKRRQEIDAGHGHSGGLFCYPYSFSYYHHFPSFSTHPLSHNNSNTNRALGVRLESKIHKPNNWNSGIMMRHAHETNMQEDPSSSMLDLSLKL | 188 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc272039g00012 | 188 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 10 | 170 | IPR044246 | GO:0009788 | |
Stsc272039g00012 | 188 | Pfam | C2H2-type zinc finger | 68 | 92 | - | - | |
Stsc272039g00012 | 188 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 68 | 95 | IPR013087 | - | |
Stsc272039g00012 | 188 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 95 | IPR036236 | - | |
Stsc272039g00012 | 188 | Gene3D | Classic Zinc Finger | 46 | 109 | - | - | |
Stsc272039g00012 | 188 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 70 | 90 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc272039g00012 | Stsc-Chr272039 | 61812 | 62378 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc272039g00012 | 44 | 160 | C2H2 Transcription Factor Family | AT5G10970 | 40.496 | 1.62e-19 | 81.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Stsc272039g00012 | zf-C2H2_6 | 1.9e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc272039g00012 | - | - | ahf:112786570 | 213.001 |