Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272039g00001 ATGAGGAAGAAGCTAGACACCCGTTTTCCTGCTGCTCGGATAAAGAAGATAATGCAAACAGACGAGGATGTTGGAAAGATAGCACTAGCAGTCCCTGTTTTAGTGTATCTTTGTAATCGCACTTATGGAATAACTCTTCAAAGAGGAGCAAAGACCATGACTTCACTGCATTTAAAACATTGCGTACAAAGCTATAATGTCTTTGACTTCTTGAGAGACATTGTTAGCAAGGTTCCTGACTATGGCCATGGCCATGGTCATGGTCATTCTGAAGGTGGTGCAGATGATCGTACCCTTCCAAAGAGAAGGAAAGCTGCTGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGGAGTAGGATGTATGAGTTAGGCCACACCGGTGGCACTGGTAGGGGAAGAGGCCGAGGCAGAGGACGAGGTCGTGGTAGAGGGGCTCGAACTGTTGAAAGAGAGGCTCATCATCAGCAGCAGGTTGAATCTGAGCCTTGCTCCTCAGTTCAGCACCCTAGCAAAGACATTCCGAATACTGGCATGTCACTGGACAATTCTCCAGAATCCAAGGAGCTTCCAAAAGAGAACACTGCATTTCATGAGGAAAATAATCAATCTTTGCGAAACATCGATCTGAATGCAAACTTAAATGAGAGCGAGGAGAAGAATACATGCACGGAAGCTGCGGCCTCTTTGCCTCCAGCCACTTTGCTGCCGTCCAGTTTGCCCGAACCGGCAACAGAGATCAAACACGAGGAAATCCCTGGCTGGTCCCTTTCTGATGCAGACAAGATGGCCATTGACACTATGCAGCTTGCAAATCTTGGTGGTCAGATAGAAGAAGATGAGGATTATGATGAGGAAGGGGAAGGGTGA 873 0.4696 MRKKLDTRFPAARIKKIMQTDEDVGKIALAVPVLVYLCNRTYGITLQRGAKTMTSLHLKHCVQSYNVFDFLRDIVSKVPDYGHGHGHGHSEGGADDRTLPKRRKAAGDDCNDSDEEAKRSRMYELGHTGGTGRGRGRGRGRGRGRGARTVEREAHHQQQVESEPCSSVQHPSKDIPNTGMSLDNSPESKELPKENTAFHEENNQSLRNIDLNANLNESEEKNTCTEAAASLPPATLLPSSLPEPATEIKHEEIPGWSLSDADKMAIDTMQLANLGGQIEEDEDYDEEGEG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272039g00001 290 MobiDBLite consensus disorder prediction 160 185 - -
Stsc272039g00001 290 MobiDBLite consensus disorder prediction 82 191 - -
Stsc272039g00001 290 MobiDBLite consensus disorder prediction 144 159 - -
Stsc272039g00001 290 SUPERFAMILY Histone-fold 4 81 IPR009072 GO:0046982
Stsc272039g00001 290 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 62 IPR003958 -
Stsc272039g00001 290 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 111 - -
Stsc272039g00001 290 Gene3D Histone, subunit A 1 77 IPR009072 GO:0046982
Stsc272039g00001 290 MobiDBLite consensus disorder prediction 82 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272039g00001 Stsc-Chr272039 1449 7765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272039g00001 1 278 CCAAT-HAP5 Transcription Factor Family AT3G12480 45.515 3.70e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc272039g00001 CBFD_NFYB_HMF 1.2e-08 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272039g00001 K21752 - gmx:100810093 367.851