Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272037g00007 ATGCCAATGGAAGTTACTCCATCCTTGCTGTTTATCATAATAAGCTTACTCTTCCACATCTCTGTGCTATTGCTATGGCGTGCAAAGAAGGATAACAATGTCCATAGAGTGCCACCTGGGCCATGGAAATTACCTCTCATAGGGAACCTCCATCAACTTGCAGGCTCGTCACTTCCACACCATGCTCTCACAAAACTAGCAAACAAACATGGCCCACTCATGCACCTTCAACTTGGTCAGATTTCAGCAGTGGTTGTTTCATCCCCCAGCATAGCCAGAGAAATCATGAAGACTCATGATCTTACTTTTGCTGATAGGCCTGAGTTTCTTCCTTCCAAGATCTTAGTCTATGATTCATCAGACATTACATTCGCTCCCTATGGTGAATTCTGGAGACAGATGAGGAAAATTTGCACAGTTGAGCTTCTAAGTTCTAAGAAGGTTCAATCTTTGTTCTATATCCGACAAGAGGAGGTAGCTAACATGCTAGAAACAATTCGTGCATCCGCCGGTGGAACCATCAATCTCAGTAAAATGATTAACAATCTCATAAGCATTGTGATTTCTAGATCTGCATTTGGCAACTTATCTGAAGACCATGAACTATTTGTGTCCTTTGTGAAGGAGGCAATAGCTCTAGGCGATGGATTTGCGCTTGCGGATGTGTTTCCTTCTTTGAAACCTCTGCATTTCATCACTGGTTTTGAAGCCAAACTGAAGAAGATGCATGTCAAGATCGACAAGATCTTAGACAAGATCATAAAGGAGAATGAAGGAAAGAAATTGGAAGATACACACCAAGAGCAGGAAAAAAAGAACGAGAATCTTGTTGAGGTTCTTTTAAGAGTCCTAAAGAGTGGCACCCTTGACACCCAAATTACAATGAACCATGTCAAAGCAGTCATTTGGGACGTATTTTCTGCTGGAACAGACACTTCAGTAGTAGTTATAGAGTGGGTTATGTCAGAATTGATGAGAAGCCCCAGAGCTATGAAGAAGGCACAGGCTGAGATTCGACAAGCTTTGAGAGGAAAGCAAACAATCCGGGAGGCAGATGTAACAGAACTTCCCTACTTGAAGGCTGTGATCAGCGAAGCAATGAGGTTACACCCTCCTCTTCCTCTGTTGCTTCCAAGACAAGCTAGAGAAGACTGCACCATCCATGGATACCATATACCCATCAATACTAAAGTCATGGTAAATGCGTACGCGCTTGGAAGAGATCCCGATTACTGGTATGATGCGGATACCTTCCTGCCAGAAAGGTTTCTGGACACTCCTATGGATTTCAAAGGGACAAACTTCGAGTACATCCCCTTTGGAGCAGGAAGGAGAATTTGTCCGGGAATTAACTTTGGTTTAGCCAACGTTGAGTTTGCTCTAGCTATGTTACTCTACCATTTCAACTGGGAACTCCCTAATGGAATTAAGCCAGAGGATTTGGATATGAATGAAGCACAAGGAGCTGTGATTGGAAGGAAAAACAACCTTTACTTGATTCCCACACCTTACCATTCTTAG 1521 0.4293 MPMEVTPSLLFIIISLLFHISVLLLWRAKKDNNVHRVPPGPWKLPLIGNLHQLAGSSLPHHALTKLANKHGPLMHLQLGQISAVVVSSPSIAREIMKTHDLTFADRPEFLPSKILVYDSSDITFAPYGEFWRQMRKICTVELLSSKKVQSLFYIRQEEVANMLETIRASAGGTINLSKMINNLISIVISRSAFGNLSEDHELFVSFVKEAIALGDGFALADVFPSLKPLHFITGFEAKLKKMHVKIDKILDKIIKENEGKKLEDTHQEQEKKNENLVEVLLRVLKSGTLDTQITMNHVKAVIWDVFSAGTDTSVVVIEWVMSELMRSPRAMKKAQAEIRQALRGKQTIREADVTELPYLKAVISEAMRLHPPLPLLLPRQAREDCTIHGYHIPINTKVMVNAYALGRDPDYWYDADTFLPERFLDTPMDFKGTNFEYIPFGAGRRICPGINFGLANVEFALAMLLYHFNWELPNGIKPEDLDMNEAQGAVIGRKNNLYLIPTPYHS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272037g00007 506 CDD CYP71-like 69 497 - -
Stsc272037g00007 506 SUPERFAMILY Cytochrome P450 36 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 FunFam Cytochrome P450 71D8 30 501 - -
Stsc272037g00007 506 Pfam Cytochrome P450 38 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 Gene3D Cytochrome P450 30 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 Coils Coil 259 279 - -
Stsc272037g00007 506 Coils Coil 331 351 - -
Stsc272037g00007 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Stsc272037g00007 506 PANTHER OS08G0105600 PROTEIN 61 505 - -
Stsc272037g00007 506 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272037g00007 506 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272037g00007 Stsc-Chr272037 24415 26189 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272037g00007 13 504 Cytochrome P450 AT3G26300 41.352 7.84e-138 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272037g00007 - K15472 gmx:100800554 623.624