Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272037g00003 ATGCAAATATCTGAGAGACATCCAAACCAAGCTGGTATAATCCAATTCTACCACCAACCTGTCCATAGCATGTATCAAAAGCTACAAAGCAATTTATGCCACAATATCCACCATGATAGTATCATGAAGGGAACCAATGTTTCTTTTGAATCCTGCAAGGATCAATACTTTACCCTGGACTCATCCCCAGCAACCACTGACCTCACAGGCTGTGAAACTGATTCCCCTTCCTATGCCAGTGGATTATCTTCTAATAGGAGTCCATTTTCTCCACAAGTCTCTCACTCATGCTATTCAGATAACCACCACTCGTCCGACAACACCTATGGCTCGCCAAATAGCGGTTACTCTAGTGTTGATGATGGGAATGAATGGAAGAACAAGCTCAGAGAACTAGAGATTTCACTGTTGGAGCCTAATGAATCAGATGCTGCTGACAGTTATGATAACTGTGTCCATGGTGGCCTCACCACAGCCTCTCCAACAATTGAATATGATTGGGATCAGATTGTGCAGATGATTCCAAAGTTAGACCTGAGAGATGTGCTGCTTCGATGTGCGCAGGCTGTGTCTGATGATGATGTAGCCACAGCAATTGGTTGGATGGATAATGTGTTGGGGAAGATGGTATCAGTTTATGGGGAACCATTCCAGAGGCTAGGTGCTTACTTGTTGGAGGGGCTAAGAGCAAGGTTGGAGTCATCTGGGAGCATGATATACAAATCCTTAAAGTGTGAACAACCAACAAGCAAAGAATTGATGAGTTACATGCACATATTGTATCAGATTTGTCCATTTTGGAAGTTTGCATATGTATCTGCAAACGCAGTCATCACAGAAGCAATGGCAAATGAATCCATGATTCATATAATCGATTTCCAGATCACACAGGGCACACAATGGCTTTTACTTATTCAAGCTCTTGCACATAGGCCTGGTGGACCGCCGTCCATTCGCATAACTGGTGTGGATGATTCTCAATCCATTCATGCTCGCGGTGGTGGACTAGAGATTGTTGGACAAAGGCTCTCTGATTTTGCCAGGTCTTGTGGAGTGCCATTCGAGTTCCACATTGCTGCAATGTGTGGCAGCCAAGTTGAAGGAACAAATATAGTGATTCGAGAAGGGGAAGCTCTGGCTGTAAATTTTCCTTATGTTCTGCATCACATGCAGGATGAGAGTGTAAGCACAGAGAATCACAGAGACAGATTGTTGAGATTGGTTAAGAGCTTGTCTCCCAAGGTTGTGACACTTGTTGAGCAAGAATCCAACACCAACACTTCTTCTTTCCTTAACAGGTTTGTTGAGATAATGGATTACTACACTGCAATGTTTGAATCAATAGATGCGGCATGCCCGAGAGATGACAGGAAGCGGTTGAATGCGGAGCAGCACTGCGTGGCGCGGGACATTGTGAACATGGTAGCTTGCGAGGGAGTGGAGAGGGTAGAGAGGCATGAACTTCTAGGAAAGTGGAGAATGAGATTCTCTATGGCTGGGTTCAGACAGTGCCCGTTGAGTCCTTATGTGATGGGTGCTGTCCGGAACATGTTGAAGGAGTTTAATGGGAATTATAGGGTTGAGCAGAGAGATGGTGCCATCTATCTTGGATGGATGAGGAGAGCTATGGTTACCTCTTCAGCTTGGTGCTGA 1653 0.4495 MQISERHPNQAGIIQFYHQPVHSMYQKLQSNLCHNIHHDSIMKGTNVSFESCKDQYFTLDSSPATTDLTGCETDSPSYASGLSSNRSPFSPQVSHSCYSDNHHSSDNTYGSPNSGYSSVDDGNEWKNKLRELEISLLEPNESDAADSYDNCVHGGLTTASPTIEYDWDQIVQMIPKLDLRDVLLRCAQAVSDDDVATAIGWMDNVLGKMVSVYGEPFQRLGAYLLEGLRARLESSGSMIYKSLKCEQPTSKELMSYMHILYQICPFWKFAYVSANAVITEAMANESMIHIIDFQITQGTQWLLLIQALAHRPGGPPSIRITGVDDSQSIHARGGGLEIVGQRLSDFARSCGVPFEFHIAAMCGSQVEGTNIVIREGEALAVNFPYVLHHMQDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSSFLNRFVEIMDYYTAMFESIDAACPRDDRKRLNAEQHCVARDIVNMVACEGVERVERHELLGKWRMRFSMAGFRQCPLSPYVMGAVRNMLKEFNGNYRVEQRDGAIYLGWMRRAMVTSSAWC 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272037g00003 550 ProSiteProfiles GRAS family profile. 170 550 IPR005202 -
Stsc272037g00003 550 MobiDBLite consensus disorder prediction 68 121 - -
Stsc272037g00003 550 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 119 544 IPR005202 -
Stsc272037g00003 550 MobiDBLite consensus disorder prediction 68 122 - -
Stsc272037g00003 550 Pfam GRAS domain family 179 549 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272037g00003 Stsc-Chr272037 9894 12707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272037g00003 1 549 GRAS Transcription Factor Family AT4G17230 56.703 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc272037g00003 GRAS 3.7e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272037g00003 - - aip:107636708 1001.12