Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272036g00007 ATGTTGGGGTTGAAAGCTCTAAAAGCACTTCACTTCAGCAGAGAACAGTGTTCAGTGATGCAAATTCTGTGCTTCTTGCACCTTCTGATAGGTTGGTATCTCTCAAACTCTAACCTTGTTAATGCTCAGCTAAAAGACCAAGCTATATTACTTGCCATCAACCAAGAGCTTGGAGTCTCTGGCTGGGATTCCAGCAACTCAAATTACTGTAATTGGCAAGGAGTAAGCTGTGGTAATCACTCAATGGTGGAGAAGCTTGATCTCGCTCACCGGAACCTTCAAGGTAATGTTACTTTGATGTCTGAGCTCAAAGCATTGAAGTGGCTTGACTTGTCAAATAATAACTTTGATGGATTGATTCCTCCTGAGTTTGGAAAGTTATCTGATCTTGAAGTTCTAGATTTGTCTTCGAATAAGTTTACAGGCTCGATTCCGCCGCAATTGGGTGATCTCAGAAGCCTCAGATCATTGAATCTTTCCAGTAATGTGCTTGTTGGAGAGATACCAATGGAGCTTCATGGCTTAGAGAATTTGCATGATCTTCAAATTTCTAGTAATCATTTGAGTGGTTTAATACCTTCTTGGTTGGGCAATTTGACCAACTTGAGGGTTTTTTCTGCTTATGAGAATCGTTTAGGTGGCAAGATTCCGGATAATTTAGGATTGATTCCTGATCTTCAGATACTTAACCTGCACTCTAATCAGCTTGAAGGCCCTATACCAGCAAGCATTTTCGCCCCGGGGAAGCTACAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGTGATATTCCTCAGGAAATTGGGAATTGTCATGCTCTTTCCAGTGTTCGAATTGGAAACAATCATCTAGTAGGTTCTATTCCTAAGACAGTTGGAAATCTTAGTAGCCTAACCTACTTTGAGGCTGACAACAATAATCTTTCCGGTGAAGTAGTGTCTGAATTTGCTCAGTGTTTGAATCTCACCCTGTTGAATTTAGCTTCAAATGGATTTATGGGAACGATTCCGCCGGAATTTGGAAAACTTATGAACCTTCAGGAGTTGATTCTTTCTGGAAATAGCCTGTTTGGAGATATCCCAAGGTCGATTCTGAGTTGCAAAAGTCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATTCCAAGTGAAATCTGCAATATTTCTAGGTTGCAGTACTTGCTTTTGGGTCAGAATTCCATGAGAGGAGAGATACCTCATGAAATTGGAAATTGTGCGAAACTTCTTGAATTACAGTTGGGCAGCAACTATTTGACTGGAACTATCCCTCCTGAAGTTGGTCATATCAGAAACTTACAGATAGCACTAAATCTGAGCTTCAATCATCTTCATGGACTACTGCCCCCTGAATTAGGAAGACTAGACAAACTAGTTTCCCTGGATGTCTCAAACAATCGGCTCTCGGGTAATATACCAGCTGAGCTTAAGGGAATGTTGAGCTTGATAGAGGTCAACTTCTCCAACAATCTTTTTGGAGGTCCTGTACCAGAATTCGTACCGTTTCAGAAGAGTCCTATTTCAAGCTTCGTCGGTAATAAAGGGCTTTGCGGAGAGCCACTGAACTCTTCATGTGGAGATCTTTATGATGATCACAAGGCCTACCATCACAGGGTTTCTTACAGGATCATACTGGCTGTAATTGGTTCTGGTTTAGCAGTTTTTATGTCGGTAACTATAGTTGTCTTGCTTTTTATGATCAGAGAGAGGCAAGAGAAAGTAGCCAAAGATGCTGCCGGGATTATAGATGATGGAACAGCCGAAAAACCAACTATAATAGCTGGGAGCATTTTTGTTGAACATCTCAAACAAGCAGTAGACCTTGATGCTGTTGTTAAAGCGACTCTGAAAGACTCTAATAAGCTCAGCAGTGGAACTTTCAGCACTGTTTACAAGGCCATCATGCCTTCTGGAGTGATCTTATCCGTGAGGAGACTGAAGTCCGTCGACAAGACAATAATGAACCACCAGAACAAGATGATTAGAGAACTCGAAAGGCTGAGCAAAGTCTGTCATGATAATCTAGTTCGACCGGTTGGCTATGTTATATATGAAGATGTTGCTCTTCTCTTGCATAATTATTTTCCAAATGGTACACTGGCTCAGCTTCTTCATGAATCTTCAAGGCAACCAGAATATCAGCCTGACTGGCCTTCTAGACTATCAATTGCCATTGGAGTTGCAGAAGGTTTGGCTTTTCTTCATCATGTAGCAATTATCCATCTTGACATTTCTTCTGGCAATGTTCTTCTAGATGCAAATTTCAAGCCATTAGTTGGGGAGATTGAGATTTCTAAACTCCTTGATCCAACCAAGGGCACTGCCAGTATTAGTGCAGTTGCTGGTTCCTTTGGTTACATACCACCAGAATATGCTTATACAATGCAAGTTACAGCACCGGGAAATGTTTATAGCTATGGCGTTGTTCTGTTGGAAATCCTTACTACTCGACTACCGGTGGAGGAGGATTTCGGTGAAGGCATAGATTTGGTGAAGTGGGTTCAAAGTGCTCCTGTAAGAGGGGAAACTCCAGAGCAGATACTGGATGCAAGGCTCAGCACTGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTTGCGTTGCTTTGTACGGACACCACACCGGCAAAACGACCAAAAATGAAGAATGTGGTTGAAATGCTCCGAGAGATAAACCAAAACTGA 2721 0.4171 MLGLKALKALHFSREQCSVMQILCFLHLLIGWYLSNSNLVNAQLKDQAILLAINQELGVSGWDSSNSNYCNWQGVSCGNHSMVEKLDLAHRNLQGNVTLMSELKALKWLDLSNNNFDGLIPPEFGKLSDLEVLDLSSNKFTGSIPPQLGDLRSLRSLNLSSNVLVGEIPMELHGLENLHDLQISSNHLSGLIPSWLGNLTNLRVFSAYENRLGGKIPDNLGLIPDLQILNLHSNQLEGPIPASIFAPGKLQVLVLTQNNFSGDIPQEIGNCHALSSVRIGNNHLVGSIPKTVGNLSSLTYFEADNNNLSGEVVSEFAQCLNLTLLNLASNGFMGTIPPEFGKLMNLQELILSGNSLFGDIPRSILSCKSLNKLDISNNRFNGTIPSEICNISRLQYLLLGQNSMRGEIPHEIGNCAKLLELQLGSNYLTGTIPPEVGHIRNLQIALNLSFNHLHGLLPPELGRLDKLVSLDVSNNRLSGNIPAELKGMLSLIEVNFSNNLFGGPVPEFVPFQKSPISSFVGNKGLCGEPLNSSCGDLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAAGIIDDGTAEKPTIIAGSIFVEHLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVILSVRRLKSVDKTIMNHQNKMIRELERLSKVCHDNLVRPVGYVIYEDVALLLHNYFPNGTLAQLLHESSRQPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVEEDFGEGIDLVKWVQSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDTTPAKRPKMKNVVEMLREINQN 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272036g00007 906 Gene3D Transferase(Phosphotransferase) domain 1 704 906 - -
Stsc272036g00007 906 ProSiteProfiles Protein kinase domain profile. 625 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272036g00007 906 Gene3D Ribonuclease Inhibitor 289 407 IPR032675 -
Stsc272036g00007 906 Gene3D Ribonuclease Inhibitor 192 288 IPR032675 -
Stsc272036g00007 906 Gene3D Ribonuclease Inhibitor 408 536 IPR032675 -
Stsc272036g00007 906 Gene3D Ribonuclease Inhibitor 42 191 IPR032675 -
Stsc272036g00007 906 SUPERFAMILY L domain-like 273 530 - -
Stsc272036g00007 906 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Stsc272036g00007 906 Pfam Leucine rich repeat N-terminal domain 52 77 IPR013210 -
Stsc272036g00007 906 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 595 703 - -
Stsc272036g00007 906 SUPERFAMILY Protein kinase-like (PK-like) 625 903 IPR011009 -
Stsc272036g00007 906 PRINTS Leucine-rich repeat signature 106 119 - -
Stsc272036g00007 906 PRINTS Leucine-rich repeat signature 127 140 - -
Stsc272036g00007 906 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 704 906 - -
Stsc272036g00007 906 Pfam Leucine Rich Repeat 345 367 IPR001611 GO:0005515
Stsc272036g00007 906 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 281 901 - -
Stsc272036g00007 906 Gene3D Phosphorylase Kinase; domain 1 595 703 - -
Stsc272036g00007 906 ProSitePatterns Tyrosine protein kinases specific active-site signature. 748 760 IPR008266 GO:0004672|GO:0006468
Stsc272036g00007 906 Pfam Protein tyrosine and serine/threonine kinase 628 900 IPR001245 GO:0004672|GO:0006468
Stsc272036g00007 906 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 244 537 - -
Stsc272036g00007 906 FunFam Nuclear pore complex protein NUP107 39 194 - -
Stsc272036g00007 906 SMART LRR_typ_2 175 198 IPR003591 -
Stsc272036g00007 906 SMART LRR_typ_2 103 126 IPR003591 -
Stsc272036g00007 906 SMART LRR_typ_2 223 247 IPR003591 -
Stsc272036g00007 906 SMART LRR_typ_2 127 151 IPR003591 -
Stsc272036g00007 906 SMART LRR_typ_2 343 367 IPR003591 -
Stsc272036g00007 906 SMART LRR_typ_2 464 487 IPR003591 -
Stsc272036g00007 906 SUPERFAMILY L domain-like 60 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272036g00007 Stsc-Chr272036 23636 26917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272036g00007 20 905 Receptor kinase-like Gene Family AT2G41820 70.946 0.0 1285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc272036g00007 PK_Tyr_Ser-Thr 8.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272036g00007 - - adu:107492611 1730.3