Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272036g00003 ATGGGGACTCCGGCATTCCCTAACCTAGGCAAACATTGCTCCGCTTCCGATTGCAAGCTCATCGATTTCTTGCCCTTCACTTGCGATTGCTGCAATCAGGTATATTGTTTGGAGCATCGAAGTTATATTAAACATAATTGTACAAAGCCCAACAAAAATGATGTCAATGTTGTGATATGTCCTCTTTGTGCCAAAGGAGTTCGCCTAATTCCAGATCAAGATCCAAATATAACTTGGGAGAATCATGTTAACGCTGAATGCGATCCATCAAATTATGAGAAAGCCACAAAGAAGAAAAAATGCCCTGCCCCTGGATGCAGAGAGGTGTTAGTATTCTCAAACACCATCAAGTGCAGGGACTGCATGGTAGACCATTGTTTGAAGCACCGCTTTGGACCTGCCCACAAGTGTCCTGGTCGCAAAAAGTTGGAAACAAGCTTTTCATTAATGAGTCTTGTGAATAGGAGTAGAAAAGAGGAGCCAAAACCCAATTTAACTTCAGCCTCATCATCTAAATGGACTTCAGGCTTTTATAATGTAGCCTCTAGTATTCTAGCTTCAGCCGAAGCAGGCATTTCCAAATTGAGCGGCGAAACTAACCAAAGCCAGCAGACGACAAGGAATGGGACGGGACAAAGCAGTGGAAGTGGACATAGAAACGGTCTAGTGGAGCAATGTCCTCAGTGTGGCGCCAAGTTTTCCTCGGTCACCACCTTGGTCGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACCGTTCTTCTGGGGCGAAGAAGGTGACAATTGATGCATGTCCAAAGTGTAGTAGGGGATTTGTAGACCCGGTTGCTCTTGTGGAACATGTTGAGAGGGAACATGGTGGTAGTTCCAGAGCTTNNNNNNNNNNGTTGAGTTTGTAG 900 0.4444 MGTPAFPNLGKHCSASDCKLIDFLPFTCDCCNQVYCLEHRSYIKHNCTKPNKNDVNVVICPLCAKGVRLIPDQDPNITWENHVNAECDPSNYEKATKKKKCPAPGCREVLVFSNTIKCRDCMVDHCLKHRFGPAHKCPGRKKLETSFSLMSLVNRSRKEEPKPNLTSASSSKWTSGFYNVASSILASAEAGISKLSGETNQSQQTTRNGTGQSSGSGHRNGLVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRSSGAKKVTIDACPKCSRGFVDPVALVEHVEREHGGSSRAXXXXLSL 299
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc272036g00003 299 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Stsc272036g00003 299 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 254 - -
Stsc272036g00003 299 SUPERFAMILY AN1-like Zinc finger 7 52 IPR035896 -
Stsc272036g00003 299 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Stsc272036g00003 299 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Stsc272036g00003 299 SMART c2h2final6 263 286 IPR013087 -
Stsc272036g00003 299 SMART c2h2final6 224 247 IPR013087 -
Stsc272036g00003 299 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Stsc272036g00003 299 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Stsc272036g00003 299 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Stsc272036g00003 299 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Stsc272036g00003 299 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Stsc272036g00003 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 291 IPR013087 -
Stsc272036g00003 299 MobiDBLite consensus disorder prediction 195 223 - -
Stsc272036g00003 299 Pfam C2H2-type zinc finger 225 247 - -
Stsc272036g00003 299 Gene3D - 3 59 IPR035896 -
Stsc272036g00003 299 Gene3D - 80 151 IPR035896 -
Stsc272036g00003 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Stsc272036g00003 299 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Stsc272036g00003 299 MobiDBLite consensus disorder prediction 195 221 - -
Stsc272036g00003 299 Gene3D Classic Zinc Finger 191 292 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc272036g00003 Stsc-Chr272036 9362 11441 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272036g00003 1 292 C2H2 Transcription Factor Family AT2G41835 60.616 1.56e-119 342
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272036g00003 zf-AN1 3.2e-07 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272036g00003 - - gmx:100806459 482.641