Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272035g00001 ATGGACATGGATGGCATCCCAGACAGCCTCGATTTCTCCGAGCACAGCACCACCACACCCACATCCGACGAGGACTGCAACTGGAACCACTTGTCCCCACTCGTCAACTGGGACTCCTTCACCACCGACAACGAAGACTTTCACACCCTCATCGGCTCCATCGTCGAAGATGCGCGCCGCGGTGGCATCTTCACTCGAGACATCGCCTGCCTTGAGGAAGACTCAAGCGCGGACGACGGCAGCGTCTCAGCAACAGACGACAAACGAGGCGGCGGCAGCAGCGAAGGGGAAGATCTGAAGGACTTGCGGCTTGTCCACCTCCTGATGGCGGCGGCGGAGGCACTCGCCAGCGCCACCAAGAGCCACGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAATTAGTGTCCTCCACCCACGGCTCCACTATGGAGAGGCTCGCGGCGCACTTTACCGACGCCCTCCAAACCCTGCTAGAAGGCGCCTGTGGGGGTGCGCATAGCGCCACAAAGCACCATCATCTCCTTCCAAGTGGGGACCACCATCAAACAGACATAATAACGGCCTTCCAGCTGCTCCAAGATATGTCCCCTTACGTTAAGTTTGCTCACTTCACAGCTAACCAGGCCATCCTCGAGGCCGTAGCCAACGAGAGGAGGGTCCACGTCATTGATTATGACGTGGCAGAAGGAACCCAGTGGGCCTCCCTTATGCAGGCCTTTGCCTCCAGTAAAGAAGGCTCACCGAGCCCACATCTACGGATCACCGCATTGTCACGAGGTGGAAACAGCGGACGTAGATCCATCGCCACCGTTCAAGAAACCGGTCGGAGATTGGTCGCGTTCGCTGCTTCCTTAGGGCAACCGTTTTCTTTTCATCACTGTAGGTTAGACCCTGACGAAATCTTTCGTCCATCATCTCTCAAACTGGTTCGTGGAGAGGCCTTGGTGTTCAACTGCATGCTGCACCTGCCACACCTGAGTTATCGGGCCCCAGACTCAGTCACTTCGTTCTTGAACGGCGCGAAGGCGTTGGGTCCGAAGCTCGTGACGGTGGTGGAGGAAGAGGTGGGGCCCATTGGAGGGGAAGCGGGGTTTGTAGGGAGGTTCATGGAGTCTTTGCAGCACTACTCGGCGGTGTATGATTCGCTGGAGGAGGGGTTTCCGATGCATATTCGGCCTCGGGCTCTGGTGGAGAGGGTTTTCTTGGGGCCAAGAATAGCGGGGTCGTTGGGGCGGCTGTACTGGAGGGGTGGGGATGAAGAGAGAGGGTCGTGGGGAGAGTGGTTGCGTGCGGAGGGGTTCACCGGAGTTCCAATAAGCTTTTCTAACCACTGCCAAGCTAAGCTGTTGGTTAGTCTGTTTAACGATGGGTATAGAGTGGAGGAATTTAGTAACAATAAATTGGTGTTGGGTTGGAAATCAAGGCGTTTGCTTTCAGCTTCTATCTGGAATTATTCTATTTCAGAACCTTATTTTTAG 1482 0.5574 MDMDGIPDSLDFSEHSTTTPTSDEDCNWNHLSPLVNWDSFTTDNEDFHTLIGSIVEDARRGGIFTRDIACLEEDSSADDGSVSATDDKRGGGSSEGEDLKDLRLVHLLMAAAEALASATKSHDLARVILVRLKELVSSTHGSTMERLAAHFTDALQTLLEGACGGAHSATKHHHLLPSGDHHQTDIITAFQLLQDMSPYVKFAHFTANQAILEAVANERRVHVIDYDVAEGTQWASLMQAFASSKEGSPSPHLRITALSRGGNSGRRSIATVQETGRRLVAFAASLGQPFSFHHCRLDPDEIFRPSSLKLVRGEALVFNCMLHLPHLSYRAPDSVTSFLNGAKALGPKLVTVVEEEVGPIGGEAGFVGRFMESLQHYSAVYDSLEEGFPMHIRPRALVERVFLGPRIAGSLGRLYWRGGDEERGSWGEWLRAEGFTGVPISFSNHCQAKLLVSLFNDGYRVEEFSNNKLVLGWKSRRLLSASIWNYSISEPYF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272035g00001 493 MobiDBLite consensus disorder prediction 75 96 - -
Stsc272035g00001 493 ProSiteProfiles GRAS family profile. 95 485 IPR005202 -
Stsc272035g00001 493 MobiDBLite consensus disorder prediction 81 96 - -
Stsc272035g00001 493 Pfam GRAS domain family 104 484 IPR005202 -
Stsc272035g00001 493 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 83 481 IPR005202 -
Stsc272035g00001 493 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272035g00001 Stsc-Chr272035 3841 5322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272035g00001 76 492 GRAS Transcription Factor Family AT5G41920 34.043 1.40e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc272035g00001 GRAS 8.6e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272035g00001 - - gmx:100787926 626.32