Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272034g00003 ATGGAAAATATTAATAAGGATGCAGAGAACGATGCAAATAGTTTCACTGCAATAAGGGGAAGCGCGGAAGAAGGAGGTGGTGGCTATGGTAGTCGCAGCGGTGATAGCGGTGGCACAACGACGGTGGATGAGGTGGCTTTGAAAAAAGGTCCTTGGACAGCGGCAGAGGATGCAATTCTGATTGAATACGTGACAAAACACGGTGAAGGGAATTGGAATGCGGTGCAGAGGAACACGGAGTTGGCACGGTGCGGAAAGAGTTGTAGGCTAAGATGGGCAAATCACTTGAGACCCAATTTAAAGAAAGGTGCTTTCTCTCCTGACGAAGAAAAGCTCATCATTGAACTCCATGCTCAGTTTGGAAACAAATGGGCTCGAATGGCTGCTTTGTTACCAGGTAGAACTGATAATGAAATCAAGAATTATTGGAACACAAGGATAAAGCGAAGGCAAAGGCAAGGGCTTCCTCTGTATTCAGATGACCCTGATCGTCCAACCATAGCAACCCCACCCACCACCCCAATAACAAACTTCATCAACAACAACAACAATTCTCCCACACCCAAATTTGAGTTTCTCCACCAAAACTATCTTCATTCTCAATCTCCACACCATCTCCACCACCACCACCTAAACCTAAACCAAAACCATTCTCCTTTAACTTCACCACTTCATCATCACAGAACACCCTCATATTCCCCTCGCCCCTTCTTGGACGCTACAACACTTTCCCCTTTATCCTCTTCGGCACACTCGCCACTATCCAATTCCCTAACATCTTTACTACCTTTGTCCTTTACCTTCCAAAGACCTGCACCATTGTTGTGCAACCCTCTTGGCTTTAAGCGCTTTCGTTCAACTCCGGATTTCAACCTTACCGAATCCTCCAATGTTAACCCAACCACACCAACAACCGCCCATTTATCCGATATTAATAACGGGTTTAGGTTCCCTGCCGTTCATCTCAACTCGCCTTCTTCTTTCTCGCACTTGTTTCAGAACCCGTCCTTGTTGGATCCCGAAAGAAATGTTAACATGGTCTCTTCGGCTACTACTTCTTCTCCTTCTAATTTTCAATGCAAGATGGAGCTCCCTTCAAACCAAATAGAGCCATTGGAGGTTAAGTTTGATGTTGAGTACAATGACCTTAATTCTTTGAATACAAGTAATGGGTTGGTTGGGGATATTCTATTATCTGAAGCTCATAACTTTGCTTCTGGAAACCATGTTTTTAGAAAGCGAAACTACTTGAGCTTGAATGAAGGGCATAATGAAGTGTTTGATGGCTGCCAAAGCTTTGATGACTCGCCTCTTAGCTCTCTTTATTGGTCTTCTCCTTCAGGACTAAAACTAAAGGAAGAAGCAACAAACCTAACTAAATCCATGAATGATGAGGACTTGTCAACATTGCTCACTGTAATGCCTTCAGCCACGCAAGGCCAACAAGATTGGCAACATAATAATACAATAGAAATTTCTAATAATGTTGATGACAATTTTGGGGTTGATATAAAACCCATAGCTTCCTTGTTACCTCTCAAAAATGCAACCAACAATAATATTAATAATAATAATAATATTAATAATAGTAACACAGGATGTTACTCATGGGACAATTTATCAGGTCTATGTTGA 1635 0.4232 MENINKDAENDANSFTAIRGSAEEGGGGYGSRSGDSGGTTTVDEVALKKGPWTAAEDAILIEYVTKHGEGNWNAVQRNTELARCGKSCRLRWANHLRPNLKKGAFSPDEEKLIIELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDPDRPTIATPPTTPITNFINNNNNSPTPKFEFLHQNYLHSQSPHHLHHHHLNLNQNHSPLTSPLHHHRTPSYSPRPFLDATTLSPLSSSAHSPLSNSLTSLLPLSFTFQRPAPLLCNPLGFKRFRSTPDFNLTESSNVNPTTPTTAHLSDINNGFRFPAVHLNSPSSFSHLFQNPSLLDPERNVNMVSSATTSSPSNFQCKMELPSNQIEPLEVKFDVEYNDLNSLNTSNGLVGDILLSEAHNFASGNHVFRKRNYLSLNEGHNEVFDGCQSFDDSPLSSLYWSSPSGLKLKEEATNLTKSMNDEDLSTLLTVMPSATQGQQDWQHNNTIEISNNVDDNFGVDIKPIASLLPLKNATNNNINNNNNINNSNTGCYSWDNLSGLC 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272034g00003 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Stsc272034g00003 544 MobiDBLite consensus disorder prediction 1 42 - -
Stsc272034g00003 544 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Stsc272034g00003 544 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Stsc272034g00003 544 Gene3D - 48 101 - -
Stsc272034g00003 544 SUPERFAMILY Homeodomain-like 47 143 IPR009057 -
Stsc272034g00003 544 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Stsc272034g00003 544 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Stsc272034g00003 544 SMART sant 48 98 IPR001005 -
Stsc272034g00003 544 SMART sant 101 149 IPR001005 -
Stsc272034g00003 544 CDD SANT 51 96 IPR001005 -
Stsc272034g00003 544 Gene3D - 104 150 - -
Stsc272034g00003 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Stsc272034g00003 544 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 496 - -
Stsc272034g00003 544 FunFam MYB-related transcription factor 48 101 - -
Stsc272034g00003 544 CDD SANT 104 145 IPR001005 -
Stsc272034g00003 544 MobiDBLite consensus disorder prediction 155 183 - -
Stsc272034g00003 544 FunFam Transcription factor GAMYB 104 150 - -
Stsc272034g00003 544 MobiDBLite consensus disorder prediction 213 228 - -
Stsc272034g00003 544 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272034g00003 Stsc-Chr272034 22474 25461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272034g00003 27 226 MYB Transcription Factor Family AT4G26930 52.212 6.07e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272034g00003 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272034g00003 - - ahf:112723793 558.14