Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272034g00002 ATGGAAGATGGCGGCAACGGCGGTGACAAAGGTGGTGGTGGTGGGGCAACAACAATAGATGTGGCTTTGAAAAAGGGTCCTTGGACTACTACAGAGGATGCAATTCTCATTGATTATGTGACGAAGCATGGTGAAGGGAATTGGAATGCAGTACAAAGAAACATTGGATTGGCTCGATGTGGAAAGAGTTGCAGGTTAAGATGGGCAAATCATTTCAGACCAAATTTGAAGAAAGGTGCTTTCTCATCTGAGGAAGAAAAGCTCATCATTGATTTCCATGCTCAGTTTGGCAACAAATGGGCTCGAATGGCTGCTTTGTTGCCTGGAAGAACTGATAATGAGATAAAAAATTATTGGAACACAAGGGTGAAGCCAAGGCAAAGGCAAGGGCTTCCTCTGTACTCAGATGACCCCAATCGCCCCACCACAACCACAGCCACAACCACACCCGCCGCCGCCGCCGTAACCCATCTTGGATCAAACTTCATGCATAATGTTCAAACAACGAATAAGTTTGAGTTTATACAACAAAGTTATCTTCCTTCTTCTCCACAACATCATTCTCCTTTAGCTTCGCCATTACAATACAGTGCATTAACATTATCTTCACCATTGTCCTCGTATGCAACATCTTCTTCACCTCTCTCATTCACTTTCCAAAGACCTGCACCATTGTTGTACAACCCTCTTAGCTTTAAGCGTTACCGCTCAACCCCGAATTTCAACCTTGATGACGGATTCGAGTTCCCTAATCATCTCAACTCGTCTTCTTCGTTCTCTCATTTATTTCAAAGTCCCACATCGCTGGATGATCTTGAAAGAAACGAGCTCTCTTTTGAGTTTTCTCCTTCCAATGTCCAAAGCAAGATGCAATTCTTTTCAAACCAAATGGAGCCGTTGGAGGTTAAGTATGATGCTGAATACAATGACCCAAGTTTTTTGACCATGAATAATAATAGGTTTGTCGGAGATTTTCTATTTGAAACTCAAGCATTAGATTCTAGCCCTCAGATTTTAAAGAAGCGAAACTACTTGGGCTTGAACGAAGGGAACAATGATGTGTTTGATAGCTACCAAAACATTGATGGCTCGCCTCTTAGCTCCCTTGACTGGTCTTCTACTCCAGGACTAAGACCAAAGGAAGAAGCAAATGACCTAAACAAATCCTTGAATAACGACTTGTCAACATTGCTCAATGTAATGCCTTCAACCATGCATGACCAACAAGATTGGCAGCAGAATTGTGCAACAGAAGTTTCTAATAAAGTCCAATCTTCTTATGTCATCATAGATGACAATTTTGGACTAGATATGAAGTCCAAAACTTCATTGTTTCCTTTTATTAGCGTTGCAACAAACCATAATGATAATAGAGGAAGTTACCCATGTGACAATTTATCTACCCAATGTTGA 1413 0.414 MEDGGNGGDKGGGGGATTIDVALKKGPWTTTEDAILIDYVTKHGEGNWNAVQRNIGLARCGKSCRLRWANHFRPNLKKGAFSSEEEKLIIDFHAQFGNKWARMAALLPGRTDNEIKNYWNTRVKPRQRQGLPLYSDDPNRPTTTTATTTPAAAAVTHLGSNFMHNVQTTNKFEFIQQSYLPSSPQHHSPLASPLQYSALTLSSPLSSYATSSSPLSFTFQRPAPLLYNPLSFKRYRSTPNFNLDDGFEFPNHLNSSSSFSHLFQSPTSLDDLERNELSFEFSPSNVQSKMQFFSNQMEPLEVKYDAEYNDPSFLTMNNNRFVGDFLFETQALDSSPQILKKRNYLGLNEGNNDVFDSYQNIDGSPLSSLDWSSTPGLRPKEEANDLNKSLNNDLSTLLNVMPSTMHDQQDWQQNCATEVSNKVQSSYVIIDDNFGLDMKSKTSLFPFISVATNHNDNRGSYPCDNLSTQC 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272034g00002 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Stsc272034g00002 470 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Stsc272034g00002 470 Pfam Myb-like DNA-binding domain 25 71 IPR001005 -
Stsc272034g00002 470 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 7 423 - -
Stsc272034g00002 470 CDD SANT 27 72 IPR001005 -
Stsc272034g00002 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Stsc272034g00002 470 SMART sant 24 74 IPR001005 -
Stsc272034g00002 470 SMART sant 77 125 IPR001005 -
Stsc272034g00002 470 CDD SANT 80 121 IPR001005 -
Stsc272034g00002 470 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
Stsc272034g00002 470 FunFam MYB-related transcription factor 24 77 - -
Stsc272034g00002 470 Gene3D - 79 146 - -
Stsc272034g00002 470 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Stsc272034g00002 470 Gene3D - 24 77 - -
Stsc272034g00002 470 Coils Coil 380 400 - -
Stsc272034g00002 470 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272034g00002 Stsc-Chr272034 14110 16896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272034g00002 4 447 MYB Transcription Factor Family AT4G26930 37.723 2.71e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272034g00002 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272034g00002 - - ahf:112723793 593.578