Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272033g00006 ATGGACCCAAAGAAAATTGCAAGCAGATATATTAGATCTGATTTCTTCATCAACGTTATTGCCACACTACCTCTACCACAGATAGTCATATGGTTTATTATACCAGCAACAAGAAGCCCTCAGACTGATCACAAGAATAATGCTCTGGCATTGATTGTTTTGCTTCAATATGTTCCGAGATTATATTTAATCTTTCCATTAAGTTCTCAAATAATCAAGGCAACAGGAGTGGTTACAAAGACTGCCTGGGGAGGAGCTGCATATAATCTGCTATTGTATATGCTGGCTAGTCATGTTTTAGGGGCATCTTGGTACCTTTTGTCTGTGGATCGGTATACTACATGCTGGAAATCAATTTGCAAAAGAGAACCTAGTCCTGAGAAATGCTTCAGTTACCTGGACTGCAGTTCTGCTAATACTATGATGCGCAGGATATGGGCAAATACTACAAATGTATTTAACAGATGTGATCCCAATAATGATATTGATTTCAAGTTTGGGATATTTGAAAATGCTGTGAAAAAGCAAGTGGTCTCTTCAAACTTCATCCCAAAATACTTTTATTGTTTGTGGTGGGGGTTGCAGCAGTTAAGCTCTTATGGGCAGAACCTAAACACAAGCACTTTCATTGGAGAAACATCCTTTGCTATTCTTATTGCCATCATGGGTCTTGTATTATTTTCCCATTTAATTGGGAACATGCAGCTATCGTGTCCGACGTGGCTGCGTCTCCGGGTTTTAACTAGAGCAACCGATTCAAGCTCCCTCTCTCTTTACATGGAGCTCAAAAAGGGAAAGCTTGTCAGGGGTGAACTAGTCATGGACCCAAAGAAAATTGCAAGCAGATATATTAGATCTGATTTCTTCATCGATGTTATTGCCACACTACCTCTACCACAGATAGTCATCTGGTTTATTATACCAGCAACAAGAAGCCCTCAGACTGATCACAAGAATAATGCTTTGGCATTGATTGTTTTGCTTCAATATGTTCCGAGATTATATTTAATCTTTCCATTAAGTTCTCAAATAATCAAGGCAACAGGAGTGGTTACAAAGACTGCCTGGGGAGGAGCTGCATATAACCTGCTATTGTATATGCTGGCTAGTCATGTTTTAGGGGCATCTTGGTACCTTTTGTCTGTGGATCGGTATACTACATGCTGGAAATCAATTTGCAAAATAGAACCTAGTCCTGAGAAATGCTTCAGTTACCTGGACTGCAGTTCTACTAATACTATGATGCGCAGGATATGGGCAGATACTACACATGTATTTAACAGATGTGATCCCAATAATGATATTGATTTCAAGTTTGGGATATTTGAAAGTGCTGTGAAAAAGCAAGTGGTCTCTTCAAACTTCATCCCAAAATACTTTTATTGTTTGTGGTGGGGGTTGCAGCAGTTAAGCTCTTATGGGCAGAATCTAAACACAAGCACTTTCATTGGAGAAACATCCTTTGCTATTCTTATTGCCATCATGGGTCTTGTATTATTTTCCCATTTAATTGGGAACATGCAGTGGCTGATGCTGTACGGGATTCAGCTATATGCAGCAAGCAATACAATTCAGTTTTCATCCAATTCCTTTTACATAACACTGGTTCTTGCCGTGTTAGACGATTTTGTTCAATATAAATGGCTTGCAACTCGTGGAGTTGATGAAGAAACCATTCTACGTGCATTGCCTGCAGATCTTCGCCGTGATATCCAGCGCCACGTATGCTTAGACCTTGTTCGGCGAGTATGA 1752 0.3978 MDPKKIASRYIRSDFFINVIATLPLPQIVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWGGAAYNLLLYMLASHVLGASWYLLSVDRYTTCWKSICKREPSPEKCFSYLDCSSANTMMRRIWANTTNVFNRCDPNNDIDFKFGIFENAVKKQVVSSNFIPKYFYCLWWGLQQLSSYGQNLNTSTFIGETSFAILIAIMGLVLFSHLIGNMQLSCPTWLRLRVLTRATDSSSLSLYMELKKGKLVRGELVMDPKKIASRYIRSDFFIDVIATLPLPQIVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWGGAAYNLLLYMLASHVLGASWYLLSVDRYTTCWKSICKIEPSPEKCFSYLDCSSTNTMMRRIWADTTHVFNRCDPNNDIDFKFGIFESAVKKQVVSSNFIPKYFYCLWWGLQQLSSYGQNLNTSTFIGETSFAILIAIMGLVLFSHLIGNMQWLMLYGIQLYAASNTIQFSSNSFYITLVLAVLDDFVQYKWLATRGVDEETILRALPADLRRDIQRHVCLDLVRRV 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272033g00006 583 Gene3D Helix hairpin bin 538 575 - -
Stsc272033g00006 583 Gene3D - 2 237 - -
Stsc272033g00006 583 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 264 583 - -
Stsc272033g00006 583 SUPERFAMILY Voltage-gated potassium channels 7 235 - -
Stsc272033g00006 583 Pfam Ion transport protein 6 235 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc272033g00006 583 Pfam Ion transport protein 278 508 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc272033g00006 583 SUPERFAMILY Voltage-gated potassium channels 278 510 - -
Stsc272033g00006 583 Gene3D - 266 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272033g00006 Stsc-Chr272033 24850 37901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272033g00006 269 583 Ion Channels AT4G30360 64.486 1.51e-136 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272033g00006 K05391 - gmx:100808425 495.352