Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272032g00005 ATGATGAACACTAATAACAACAGGAACAACCCAGCACCAGCACCAGTACAACCTTCTCCCTCCTCTGGCACCGGGACCGGAAGGTATCGGGGTACCCGGTGCCGGAGTGGGAAATGGGTGTCAGAGATAAGGGAGCCACGCAAGTCAACTCGCATATGGCTAGGGACTTACCCAACACCGGAGATGGCTGCCACCGCTTACGATGTTGCTGCTCTTGCATTGAGAGGCCCAGATGCCAATCTCAACTTCCCCAATTTCATGCTCTCTTACCCTATTCCTGCCTCCTTGTCTGCCCCCGATATTCGCGCTGCTGCCGCCGCCGCAGCCGAGGCCAGGCTTGTCACACCTCCGCCGCCGCCAACACCTGTTGCTGCTGGGAGCTTTTACAGTGAAGAAAAAAACGGTGAAGAGGAGGTATGGAATATGCCGAGCTTGATGGAAGAAATAGCCAGGGGAATGCTTATGAGTCCACCAAGAATGGAATCTTTCTCTGCTGATGATTTTACTGAATACTATTCGGATCTATATAGTATCCTTTGGAGTACTCAATTTGGTGCTGATGAAATACAACTAATGGATGGAAATGAGTCAGGCTATTCAATGGGATTTGTGGCTCGACTCGTTTTACTAAACAGGTCAGATTTAGGCTTTTGGTAA 657 0.5008 MMNTNNNRNNPAPAPVQPSPSSGTGTGRYRGTRCRSGKWVSEIREPRKSTRIWLGTYPTPEMAATAYDVAALALRGPDANLNFPNFMLSYPIPASLSAPDIRAAAAAAAEARLVTPPPPPTPVAAGSFYSEEKNGEEEVWNMPSLMEEIARGMLMSPPRMESFSADDFTEYYSDLYSILWSTQFGADEIQLMDGNESGYSMGFVARLVLLNRSDLGFW 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272032g00005 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 148 - -
Stsc272032g00005 218 ProSiteProfiles AP2/ERF domain profile. 28 84 IPR001471 GO:0003700|GO:0006355
Stsc272032g00005 218 Gene3D AP2/ERF domain 28 85 IPR036955 GO:0003700|GO:0006355
Stsc272032g00005 218 SMART rav1_2 28 90 IPR001471 GO:0003700|GO:0006355
Stsc272032g00005 218 Pfam AP2 domain 33 76 IPR001471 GO:0003700|GO:0006355
Stsc272032g00005 218 FunFam Ethylene-responsive transcription factor 2 28 85 - -
Stsc272032g00005 218 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Stsc272032g00005 218 MobiDBLite consensus disorder prediction 1 35 - -
Stsc272032g00005 218 SUPERFAMILY DNA-binding domain 29 85 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272032g00005 Stsc-Chr272032 42888 44393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272032g00005 29 160 AP2-EREBP Transcription Factor Family AT5G52020 58.904 5.03e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc272032g00005 AP2 4.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272032g00005 - - pcin:129293795 176.792