Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272031g00010 ATGACTCGCCAGGGAGCTCAAGAAGAAAGCGATAACATGCTCATCGATGAACCACAACTGCCGCAACGAGCCCAAATCGCTGCCCTTCCTGATGAGTTCAACCCCAGTTATCTCAAATTATATTACAGTAAGCTGTTTCCTCATTCCGATCTATATAGATGGATGTCTTACGGTAACGATGGGAAGCATCCCGGTTGTGATTCATCTTACTTGGGGCGAAGGGAATTCTCTTACACGTTGGACAACGATATATTTGTGCGCTACAATACCTTCAATAGCGCCGCCGAACTTGAAAACTCCATCAAAGAAAAGTGCCCTTTGAAGATAGATATTGGACCCATCTACAACCTCAATCCTGCAAATAGGAATGCCTATGCTGGAGATAATGTTCTTACTCCGGTCGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATGTTAGATACTGCTGCTCAGGTGCTGATGTTTGTCTCGATTGCTGGCCATTAATGACTGTAGCTATCAAAGTAATCGATACTTCCTTAAGAGATGACTTTGGGTTTAGACATATTCTCTGGGTATACAGTGGTCGACGTGGTGTACATTGTTGGGTTTGTGATAGAAAGGCAAGATGGTTGACTAATGAGCAGAGAGCAGCAGTTGCGGACTATTTTCGTGTCTACAAGGGAAATGAAAATAGCAATAAGAAGGTTACTTTGATGGGTCAAGTTCTGCATCCCTTTCTGGCGAGATCATATACCGAAGTTCTCAAGGAATATTTTGAGACAAAACTGCTGACAAGTCAAAATATACTTTCTAGTGAGGAGAGATATGAGAAGATCCTAGACATGATTCCTGATCAATCTATTGCTTCTGAACTTCGAGCTAAGTGGCAAGACGGTAGGCGGTCATCCAGTGCAAAGGAAGACATTAATATTGTTCGATGGGAACAGCTTAAACAGTTGCTTCAAAGGCATAAGGCACAAGGGGTGCGTAGGTGTGTTGAAGAGATTGTGTTCACCTTTACATACCCCAGGCTTGATATGGAGGTTTCTAAACATATGAACCATCTGCTTAAAGCTCCCTTCTGTGTGCACCCAAAAACAGGCCGTGTTTGTGTCCCAATTGACCCAAATAACTGTGAAGAATTTGATCCAACCACGGTACCAACCCTTACACAGCTTTTGGAAGAGCTTAATAGGGAGGGCTTCAGATCTGATGTTGAAGGAGAATGGAATAAAACTTCACTTGGAAATGCCATCAAGCTCTTTAGGTCATCCTTCCTACAGCCATTACTAAAATCTTGCAAGGAGGAAATGGAAAGCTCCTATAATGCGAAATTGCAACAGTCGAAGAATCTCCTTAGCTGGTAG 1362 0.4258 MTRQGAQEESDNMLIDEPQLPQRAQIAALPDEFNPSYLKLYYSKLFPHSDLYRWMSYGNDGKHPGCDSSYLGRREFSYTLDNDIFVRYNTFNSAAELENSIKEKCPLKIDIGPIYNLNPANRNAYAGDNVLTPVERELIFDIDMTDYDDVRYCCSGADVCLDCWPLMTVAIKVIDTSLRDDFGFRHILWVYSGRRGVHCWVCDRKARWLTNEQRAAVADYFRVYKGNENSNKKVTLMGQVLHPFLARSYTEVLKEYFETKLLTSQNILSSEERYEKILDMIPDQSIASELRAKWQDGRRSSSAKEDINIVRWEQLKQLLQRHKAQGVRRCVEEIVFTFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNNCEEFDPTTVPTLTQLLEELNREGFRSDVEGEWNKTSLGNAIKLFRSSFLQPLLKSCKEEMESSYNAKLQQSKNLLSW 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272031g00010 453 PANTHER DNA PRIMASE SMALL SUBUNIT 28 438 - -
Stsc272031g00010 453 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 39 394 IPR014052 GO:0003896|GO:0006269
Stsc272031g00010 453 SUPERFAMILY Prim-pol domain 33 397 - -
Stsc272031g00010 453 Gene3D DNA primase, PRIM domain 24 434 - -
Stsc272031g00010 453 CDD AE_Prim_S 47 382 IPR014052 GO:0003896|GO:0006269
Stsc272031g00010 453 FunFam DNA primase 25 434 - -
Stsc272031g00010 453 Pfam DNA primase small subunit 140 373 IPR002755 GO:0003896|GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272031g00010 Stsc-Chr272031 58394 62397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272031g00010 1 453 Core DNA Replication Machinery Family AT5G41880 63.537 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272031g00010 K02684 - qsa:O6P43_034334 741.495