Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272030g00002 ATGGGGAAAACACCATGCTGTGATAAACATGGAGTGAGAAGAGGTGCTTGGACTCCTGAAGAAGATGAAGCATTGGTTGAATACATTAAGAAGCATGGCCATGGAAGTTGGAGAACACTCCCAAAGCAAGCAGGTCTCCTTCGATGCGGGAAAAGCTGTCGTCTAAGGTGGATAAATTACCTTCGCCCTGACATAAAGCGCGGAATGTTTACTATTGAAGAAGAAGGTGCAATCATTCAGCTCCATGGCATGCTTGGAAACAGGTGGGCTGCTATAGCATCCCATCTTCCTGGAAGAACAGACAATGAAATCAAGAACTTTTGGAACACGCAACTGAAGAAGCGCCTGCCTCGATCCTCTTTCGCTCCTGATCATGCTAATCTTAAGTCCGAATCTCCTTCCACGCGCCACATGGTGCAATGGGAAAGTGCTAGAGTTGAAGCTGAGGCAAGGTTGTCATTAGAATCCTCATTGCATAATTCATTTTCAGCAAGCAAGTCTTACCAGGATCACTTTCTCCAACTCTGGCATTCTGAGGTAGGACAGTCGTTTCGCGTGATCAAGTCCAAAGAAGAAGAAGAACAACAACAAGCAGTTGTGACACAGAATCTTGCATCACAAGCATCATTATTGTCTTCGTCGAAATTGGAGTCGAGTTCTGAAGTAGTCTCATTGAAGCTGAAGAACACTGAAAGCAGTTCCTTTGCAAACATGACACATGAACAACAAAAGAGTAGCAGTAAAGCGAATAAGCCTGAAGACGGCGGCGCGGCCGAGTCAGTTTCAGGCTACTATGAGTTTCTTGACACTTCTGATTCTTCAATAAATCATCTGCTAGATGTGCCTGATGGTGAAGTGTTATTCTTAGGACAGAATGACAATTTCCTCAATAATACCCTTGATGGTAGATGTGAGTAA 918 0.4423 MGKTPCCDKHGVRRGAWTPEEDEALVEYIKKHGHGSWRTLPKQAGLLRCGKSCRLRWINYLRPDIKRGMFTIEEEGAIIQLHGMLGNRWAAIASHLPGRTDNEIKNFWNTQLKKRLPRSSFAPDHANLKSESPSTRHMVQWESARVEAEARLSLESSLHNSFSASKSYQDHFLQLWHSEVGQSFRVIKSKEEEEQQQAVVTQNLASQASLLSSSKLESSSEVVSLKLKNTESSSFANMTHEQQKSSSKANKPEDGGAAESVSGYYEFLDTSDSSINHLLDVPDGEVLFLGQNDNFLNNTLDGRCE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272030g00002 305 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc272030g00002 305 SMART sant 13 63 IPR001005 -
Stsc272030g00002 305 SMART sant 66 114 IPR001005 -
Stsc272030g00002 305 MobiDBLite consensus disorder prediction 120 140 - -
Stsc272030g00002 305 CDD SANT 16 61 IPR001005 -
Stsc272030g00002 305 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc272030g00002 305 MobiDBLite consensus disorder prediction 233 259 - -
Stsc272030g00002 305 MobiDBLite consensus disorder prediction 125 139 - -
Stsc272030g00002 305 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc272030g00002 305 Gene3D - 69 116 - -
Stsc272030g00002 305 CDD SANT 70 110 IPR001005 -
Stsc272030g00002 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 244 - -
Stsc272030g00002 305 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc272030g00002 305 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc272030g00002 305 FunFam Myb transcription factor 11 81 - -
Stsc272030g00002 305 Gene3D - 14 66 - -
Stsc272030g00002 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc272030g00002 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272030g00002 Stsc-Chr272030 17164 18609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272030g00002 1 292 MYB Transcription Factor Family AT3G61250 49.839 5.93e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272030g00002 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272030g00002 K09422 - gmx:100782075 371.703