Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272030g00001 ATGGGGTGCCAGCAACAAATAGAAAAAACAAAAGCAAAACACAGAAAGGGGTTATGGTCACCTGAAGAAGATAACAAGCTCAGAAATTATATCCTAAACTATGGCCATGGTTGTTGGAGTTCAGTCCCCATTAAAGCAGGGTTGCAAAGGAATGGAAAGAGTTGTAGGCTGAGATGGATTAACTACCTGAGGCCAGGGTTAAAAAGAGGCATGTTCACCAAACAAGAGGAGGATACAATTCTCACCCTTCACCACATGTTGGGTAACAAGTGGTCTCAGATAGCACAAAGATTGCCAGGAAGGACTGACAATGAAATCAAGAATTATTGGCATTCATATTTGAAGAAGAAAGTTGCCAAAGCAAAAGAAATTGAATCTCACCACCAACAAGTTCAGCATGCAACTTCAAGCTCAGACACAATAGATTATTCATTCTCTCCCAATAAACTTGTAACTAATGATCCAAACTATGGATTGTTACCAGAAAACATGGATGAATATAATAAGAACAATAATACCAATAATTCACATAGCTCCTTATTACCAAAGTTGTTATTTGCTGAGTGGCTTTCAGTGGACCAAGTCAATGGTGGTAGTTCTTCAATGAACTCATCAGATGAGTCTTTGATGATGTTGGGAAATGGGTTTGATCAGAATTCATGTTTCCAAGAAGATTTGATGCATATGTCATCATCATCAGAAGGAGCCTTTGGTGGTGGAGAATATCAGAATAGTCTAATAAGTCATTGTTCATCAGCAACCGAAGAAGTGTACAATTCACAGGTTAATAAGTTCTCAAATCAAGTTGTTGGAAATGATGTCATTCAAGATTACATTGATGGTGCTGATTTGTGCAGCAATTTCAGCCTCATCAACAATCCTGCAATGTATGTTATGAGTAATTCAGTATGA 912 0.3783 MGCQQQIEKTKAKHRKGLWSPEEDNKLRNYILNYGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGMFTKQEEDTILTLHHMLGNKWSQIAQRLPGRTDNEIKNYWHSYLKKKVAKAKEIESHHQQVQHATSSSDTIDYSFSPNKLVTNDPNYGLLPENMDEYNKNNNTNNSHSSLLPKLLFAEWLSVDQVNGGSSSMNSSDESLMMLGNGFDQNSCFQEDLMHMSSSSEGAFGGGEYQNSLISHCSSATEEVYNSQVNKFSNQVVGNDVIQDYIDGADLCSNFSLINNPAMYVMSNSV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272030g00001 303 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Stsc272030g00001 303 Gene3D - 71 141 - -
Stsc272030g00001 303 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc272030g00001 303 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Stsc272030g00001 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Stsc272030g00001 303 PANTHER MYB DOMAIN PROTEIN 55 6 248 - -
Stsc272030g00001 303 FunFam MYB transcription factor 71 143 - -
Stsc272030g00001 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc272030g00001 303 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc272030g00001 303 Gene3D - 16 68 - -
Stsc272030g00001 303 FunFam MYB transcription factor 13 69 - -
Stsc272030g00001 303 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Stsc272030g00001 303 MobiDBLite consensus disorder prediction 154 174 - -
Stsc272030g00001 303 SMART sant 68 116 IPR001005 -
Stsc272030g00001 303 SMART sant 15 65 IPR001005 -
Stsc272030g00001 303 CDD SANT 72 114 IPR001005 -
Stsc272030g00001 303 CDD SANT 19 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272030g00001 Stsc-Chr272030 13012 15722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272030g00001 9 190 MYB Transcription Factor Family AT3G48920 53.846 3.22e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272030g00001 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272030g00001 K09422 - gmx:100803537 350.517