Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272028g00004 ATGAACTTTCCCATCTTCCTCCTCTTCTTCTTTAACCCTCCTCAAAAACACCTTATTGTATCATCAACCATAGAAAACACATGCTTAGATGCCGTTTGCAACCCAAGTGAGCCACTAATCCGATTCCCTTTCCTAATAGAACCAAACTCATCATCATCATCATCACCATGTGGGTATCCAGGTTTCACAGTAACATGCAACAACCGTGGCCAAACACTCCTCAACCTACCTCAGTCAGGAGGAGAATTCAGCATCAAAGAAATAGACTACGACACTCAACAAGTGTGGGTAAACGACCCTCACAACTGTCTCCCAAAACGAATACTCTCTCTCAACCTCACTTCATCCCCATTCGAAGCCGTTTACAATCAAGAATTCACGTTCTTCAACTGTTCCGTGAACTTGGAGTATCTCAAGTATAGGTACAACCCCATAGCTTGTCTAAGTGATTCAAACCACATGGTTTTTGCAACGGCTTCATCAAGCGTTGTTGTTTACCTGTCGTCGATTTGTAACGTGGTTAAGAGGGTGAAAGTGCCGGTTGCGGTGCCGTTTTACGAACACGCTGTGTCGTCTAACCTCGGCGATGATTTAAGGTTGTCGTGGGAATGGCCACAGTGTGGGAGGTGTGAGTCGCACGGTGGAAGATGTGGCTTTGAAAGCAACACCACTTCACATGTTGTGTGTTTCAACGATTTCCCTTCAAAAGGGATTTCTCGTGGTGCACAATATGCAATAGGTATAGGCTTAGGAGTACCAGCATTATTGTGCTTCATTGCGATATTGAGTTGCCTCTGCAACAAGCTCAAAATCTTAGCCCACGGTTGGGCCTGGGACAGTCAAACTGTACCAGATTTCGAGCCCCTCATTAGCCCACAACAAACCATCACTTTGGGCCTAGATGGGCCCACTATTGATTCGTACCCAAAAATGGTTGTGGGTGAGAGCCCAAATCTTCTTCTGAGGCCCAATGATAAAACATGCCCAATATGCTTGTCAGAGTACAAGCCCAAAGAGACAGTGAAAAGAATACCTGATTGCCTTCATTGTTTTCACGCTCAATGCATTGACGAGTGGCTTCCATTGAATGCATCTTGCCCAATTTGCCGAACTTCTCCTAACAAGTTACCTGCAGCAGCTTAA 1143 0.4532 MNFPIFLLFFFNPPQKHLIVSSTIENTCLDAVCNPSEPLIRFPFLIEPNSSSSSSPCGYPGFTVTCNNRGQTLLNLPQSGGEFSIKEIDYDTQQVWVNDPHNCLPKRILSLNLTSSPFEAVYNQEFTFFNCSVNLEYLKYRYNPIACLSDSNHMVFATASSSVVVYLSSICNVVKRVKVPVAVPFYEHAVSSNLGDDLRLSWEWPQCGRCESHGGRCGFESNTTSHVVCFNDFPSKGISRGAQYAIGIGLGVPALLCFIAILSCLCNKLKILAHGWAWDSQTVPDFEPLISPQQTITLGLDGPTIDSYPKMVVGESPNLLLRPNDKTCPICLSEYKPKETVKRIPDCLHCFHAQCIDEWLPLNASCPICRTSPNKLPAAA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272028g00004 380 Pfam Ring finger domain 327 370 IPR001841 -
Stsc272028g00004 380 SMART ring_2 328 369 IPR001841 -
Stsc272028g00004 380 ProSiteProfiles Zinc finger RING-type profile. 328 370 IPR001841 -
Stsc272028g00004 380 Pfam Wall-associated receptor kinase C-terminal 166 231 IPR032872 -
Stsc272028g00004 380 Pfam Wall-associated receptor kinase galacturonan-binding 32 99 IPR025287 GO:0030247
Stsc272028g00004 380 CDD RING-H2_EL5-like 328 370 - -
Stsc272028g00004 380 SUPERFAMILY RING/U-box 321 373 - -
Stsc272028g00004 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 375 IPR013083 -
Stsc272028g00004 380 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 373 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272028g00004 Stsc-Chr272028 22449 25584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272028g00004 28 374 C3H Transcription Factor Family AT2G46495 36.752 6.01e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272028g00004 - - adu:107460528 690.649