Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272027g00001 ATGATTTCTCTAATCATGCCTCCTCGTGATCAAATATCTCGTGTCACTAAGATGTTGGGCGATGAATTTGGAACTGCTTCAAATATTAAAAGTAGGGTGAACCGCCAGTCGGTGTTGGGAGCCATTACTTCTGCTCAACAGAGGCTAAAGCTTTACAATAAAGTTCCTCCAAATGGGTTGGTCCTCTACACTGGAACCATTGTCACTGAAGATGGCAAGGAAAAGAAGGTGACAATTGATTTTGAACCATTCAAGCCTATCAATGCATCGCTGTACCTCTGTGATAACAAGTTTCACACTGAAGCTCTAAATGAACTTTTAGAATCTGATGACAAGTTTGGTTTTATTGTTATGGATGGAAATGGAACCCTTTTCGGGACTTTAAGTGGAAATACTCGTGAGGTGCTTCATAAATTTACTGTTGATCTGCCGAAGAAGCACGGTAGAGGAGGGCAGTCAGCTTTGCGTTTTGCCCGTCTTCGTATGGAAAAGAGGCACAATTATGTTAGGAAGACTGCAGAACTTGCCACTCAGTTCTTCATCAATCCTGCCACTAGTCAGCCTAATGTCTCGGGACTTATACTTGCCGGTTCAGCTGACTTCAAGACTGAGCTGAGTCAGTCCGATATGTTTGATCCTCGTCTGCAAGCGAAAATATTGAATGTGGTTGATGTTTCATATGGTGGTGAAAACGGGTTCAATCAAGCCATTGAGTTGTCTGCAGAGATCTTGTCAAATGTGAAGTTCATTCAAGAGAAACGCTTGATAGGAAAATATTTTGAGGAGATCAGTCAAGACACCGGGAAATATGTCTTTGGGGTTGATGACACATTGAAGGCTCTGGAGATGGGGGCAGTTGAAACACTTATTGTATGGGAAAATTTGGACATTAATAGGTATGTGCTGAAAAATGCTACTACTGGTGAGATCGTCATAAAGCACTTGAACAAGGATCAAGACACCGACCAAAGCAACTTCCGAGATCCAGCCACCTCTGCAGAGTTGGAGGTCCAGGAGAAAATGCCCTTGCTCGAGTGGTTCGCCAATGAGTACAAACGATTTGGATGCTCTCTTGAATTCGTGACCAACAAGTCACAAGAAGGATCACAATTTTGCAGGGGGTTTGGTGGCATTGGGGGCATCCTTCGTTATCAGCTCGACATCAGATCATTTGATGAGTTATCTGATGATGGAGAAGTGTACGAGGATTCCGATTAA 1218 0.4319 MISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDINRYVLKNATTGEIVIKHLNKDQDTDQSNFRDPATSAELEVQEKMPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDDGEVYEDSD 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272027g00001 405 Pfam eRF1 domain 1 1 106 IPR005140 -
Stsc272027g00001 405 Gene3D - 247 405 IPR029064 -
Stsc272027g00001 405 FunFam Eukaryotic peptide chain release factor subunit 1 104 245 - -
Stsc272027g00001 405 SMART eRF1_1_2 1 108 IPR005140 -
Stsc272027g00001 405 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 1 108 IPR024049 -
Stsc272027g00001 405 SUPERFAMILY L30e-like 246 388 IPR029064 -
Stsc272027g00001 405 NCBIfam peptide chain release factor aRF-1 1 385 IPR004403 GO:0003747|GO:0006415
Stsc272027g00001 405 Gene3D eRF1 domain 2 104 245 IPR042226 -
Stsc272027g00001 405 Pfam eRF1 domain 3 249 386 IPR005142 -
Stsc272027g00001 405 Pfam eRF1 domain 2 112 245 IPR005141 -
Stsc272027g00001 405 FunFam Peptide chain release factor subunit 1 247 405 - -
Stsc272027g00001 405 Gene3D eRF1 domain 1 1 103 IPR024049 -
Stsc272027g00001 405 SUPERFAMILY Translational machinery components 110 244 - -
Stsc272027g00001 405 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 397 IPR004403 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272027g00001 Stsc-Chr272027 9210 10835 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272027g00001 1 405 Eukaryotic Initiation Factors Gene Family AT3G26618 93.333 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272027g00001 K03265 - nnu:104602377 791.956