Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272021g00002 ATGCACACTCCCTTGATGCTAGTGCTGTTCTTGTACTGTTGCATTGGCTTTTCTGTTATTTTTTCTGAGGGAGCTCAAGCTCAGGCTGCATCAGATGATGAATTATGGACTCTGCTCGCGATCAAGTCAAGTCTGGTTGATTCGATGAATCGTCTGAAGGATTGGCAGATACCGAGCAATGTGACAGAGCCTGCAGCAGGTTCAATAATTCATTGTAGTTGGACTGGAGTTTTGTGCAACTCTAGAGGCTTGGTAGAAGGTCTTGATCTCTCAAACATGAATCTTAGCGGCCGTACCTTTGATGTGAGCCAGAACTTCTTCAATGGCAGCTTTCCAAGTGGTCTTGGAAGAGCTGCAGAGTTGAGATCAATCAATGCTTCGAGCAACGACTTCTCAGGCCTGCTTCCTGAGGACATTGGAAACGCGACAATGCTCGAGAGCCTTGACTTTCGCGGGAGCTACTTCATAAGTCCAATCCCCAAGAGTTTCACAAATTTGCAGAAGCTCAAATTTCTTGGCCTTTCAGGCAATGACTTCAAAGGGGAGATTCCGGGTTATCTCGGTGAACTTTCTTCTCTGGAGACATTGATTATGGGATACAATGAGTTCAAAGGTGAGATTCCTGCGGAGTTTGGGAATCTGACCAATCTTCAATACCTTGATTTGGCTGTAGGCACTCTCAGTGGACAAATTCCACCTGAATTGGGTAAGCTGAAAAATCTTACAACAGTTTACTTGTACAGAAACAACTTCACTGGAAAAATTCCACCTCAACTTGGCAGCATTATGTCACTAGTATTTTTGGACCTATCTGACAACCAAATCACAGGAGAGATTCCAGAAGAACTTGCTAATTTGGAAAACCTGCAGCTCCTGAATTTGATGAGCAATAAACTTACTGGTCCAGTACCGGATAAGCTTGGCGAATTGAAGAATTTGCAGGTGCTTGAGTTGTGGAAGAATTCTTTAGAAGGTCCTTTGCCGGTTAACCTTGGAAAGAACTCTCCATTGCAGTGGTTGGATGTGTCATCGAACTCGTTATCCGGCGAGATCCCACCAGGTTTGTGTACTACAGGCAATCTCACTAAACTAATCCTATTCAACAATTCCTTCTCTGGTTCCATTCCAATTGGACTTTCAAAATGTTTGTCCTTGGTTCGTGTTCGGATTCAGAACAATCTTATTTCCGGGACTATTCCAGTCGGCTTTGGGAACCTCCCAGCTCTTCAGCGGCTGGAGTTGGCAAAGAACAACCTCAGTGGCCAAATTCCTATAGACATTACCTTATCCTCATCTCTCTCTTTCATTGATGTATCATGGAATCACCTTCAGTCTTCTCTACCTCCTGAGATTCTTTCTGTTCCAACCCTTCAAACCTTCATTGCTTCTCACAACAGCTTTGGAGGCAATTTCCCAGATGAGTTTCAGGACTGTCCATCTCTCTCTGTTTTGGATCTTTCAAACACCGAAATCTCGGGAAAAATCCCAGAAAGCATTGCTTCTTGTCAAAGATTGGTCAACCTCAACCTTAGAAACAACCAATTGACAGGTGAAATCCCCAAATCAATCACAAACATGCCAACCTTATCTGTTCTTGACCTGTCCAACAATTCACTCACCGGTAAAATACCCGAAAATTTTGGTGTCTCCCCGGCTCTCGAAACACTGAACCTCTCCTACAACAAGCTCGAGGGTCCGGTACCATCAAATGGCATCTTAATCTCCATAAATCCTAATGATCTTGTAGGCAACCCTGGTCTTTGTGGCGGCATTCTCCCCCCATGTTCTAAGAGTTTCACTTTCACAAACCATCTAACAGGTGGCAGGCACACGAAACACATCATCATCGGTTTTGCGACCGGCATCTCAGTGATCCTATCCATTGCTGCAGCATACTTAGCTGGCAGAATTATCTACAACAGAATCTACTTTTACAACAATTTCATCAATGATTTGTTCAAAACCAGCCATGAAGATTGGCCATGGAGACTAGTAGCATTCCAAAGGGTGAGTTTCACAAGCACTGAGATCCTAACTTGCATAAAGGAGTCAAATGTCATAGGAATGGGAGCCACAGGCATTGTTTACAAAGCCGAAATCCGAAACAGACCGCACACGATGGTGGCGGTTAAGAAGCTATGGAGATCAGGATCAGACATAGAGAGTGGCAATAGTGATGTTGTAAGAGAAGTGGAGCTCTTAGGGAAGCTAAGGCACAGGAACATTGTGAGGCTATTGGGGTATGTGCATAATGAAAGAGATGTTATGATGGTTTATGAGTACATGGCTAATGGGAACTTGGGGAATGCACTGCATAATGGTGAACAATGTGAGAGGTTGCTTGTGGATTGGGTTTCAAGGTACAACATTGCTCTTGGTGTTGCTCAAGGCCTTCACTATCTTCACCATGATTGCCATCCACCTGTTATTCATAGGGATATTAAGTCCAATAACATACTTCTTGATGCTAATTTGGAGGCTCGGATCGCGGATTTCGGCTTGGCCAAGATGATGATCCATAAGAATGAGACTGTTTCAATGGTAGCTGGATCATATGGATACATTGCACCAGAATATGGATACACCCTGAAGGTGGACGAGAAGATTGACATATACAGTTATGGTGTGGTGCTTTTGGAGCTCATAACTGGAAAAACGCCATTAGACCCTTCGTTTGGAGAATGTGTGGACATAGTGGGGTGGATAAGAAAGAAGAGGAGCAACAAAGCACTGGAAGAAGCACTAGACCCAACCATAGCAGGTCAGTGCAAGCATGTCCAAGAAGAGATGCTTCTTGTGCTGAGAATAGCACTGCTATGCACTGCAAAGCTTCCAAAGGAAAGGCCATCCATGAGGGACATTATCACAATGCTCGGAGAGGCAAAGCCGAGGAGGAAGAGTGTCTGCCGCGATATCAGGGCCCAAGATGGTGCCATGGAAAAGCCAATATTTACTGCATCGCCGGTGGTAAGCCTTTTGTAA 2982 0.4447 MHTPLMLVLFLYCCIGFSVIFSEGAQAQAASDDELWTLLAIKSSLVDSMNRLKDWQIPSNVTEPAAGSIIHCSWTGVLCNSRGLVEGLDLSNMNLSGRTFDVSQNFFNGSFPSGLGRAAELRSINASSNDFSGLLPEDIGNATMLESLDFRGSYFISPIPKSFTNLQKLKFLGLSGNDFKGEIPGYLGELSSLETLIMGYNEFKGEIPAEFGNLTNLQYLDLAVGTLSGQIPPELGKLKNLTTVYLYRNNFTGKIPPQLGSIMSLVFLDLSDNQITGEIPEELANLENLQLLNLMSNKLTGPVPDKLGELKNLQVLELWKNSLEGPLPVNLGKNSPLQWLDVSSNSLSGEIPPGLCTTGNLTKLILFNNSFSGSIPIGLSKCLSLVRVRIQNNLISGTIPVGFGNLPALQRLELAKNNLSGQIPIDITLSSSLSFIDVSWNHLQSSLPPEILSVPTLQTFIASHNSFGGNFPDEFQDCPSLSVLDLSNTEISGKIPESIASCQRLVNLNLRNNQLTGEIPKSITNMPTLSVLDLSNNSLTGKIPENFGVSPALETLNLSYNKLEGPVPSNGILISINPNDLVGNPGLCGGILPPCSKSFTFTNHLTGGRHTKHIIIGFATGISVILSIAAAYLAGRIIYNRIYFYNNFINDLFKTSHEDWPWRLVAFQRVSFTSTEILTCIKESNVIGMGATGIVYKAEIRNRPHTMVAVKKLWRSGSDIESGNSDVVREVELLGKLRHRNIVRLLGYVHNERDVMMVYEYMANGNLGNALHNGEQCERLLVDWVSRYNIALGVAQGLHYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIHKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELITGKTPLDPSFGECVDIVGWIRKKRSNKALEEALDPTIAGQCKHVQEEMLLVLRIALLCTAKLPKERPSMRDIITMLGEAKPRRKSVCRDIRAQDGAMEKPIFTASPVVSLL 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272021g00002 993 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 337 599 - -
Stsc272021g00002 993 SUPERFAMILY L domain-like 71 305 - -
Stsc272021g00002 993 Gene3D Transferase(Phosphotransferase) domain 1 766 978 - -
Stsc272021g00002 993 Pfam Leucine rich repeat N-terminal domain 32 80 IPR013210 -
Stsc272021g00002 993 SUPERFAMILY RNI-like 228 570 - -
Stsc272021g00002 993 ProSitePatterns Protein kinases ATP-binding region signature. 687 712 IPR017441 GO:0005524
Stsc272021g00002 993 Pfam Leucine rich repeat 504 563 IPR001611 GO:0005515
Stsc272021g00002 993 Gene3D Ribonuclease Inhibitor 31 182 IPR032675 -
Stsc272021g00002 993 Gene3D Ribonuclease Inhibitor 183 279 IPR032675 -
Stsc272021g00002 993 FunFam MDIS1-interacting receptor like kinase 1 681 765 - -
Stsc272021g00002 993 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 320 961 - -
Stsc272021g00002 993 SUPERFAMILY Protein kinase-like (PK-like) 674 958 IPR011009 -
Stsc272021g00002 993 Pfam Protein kinase domain 683 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272021g00002 993 Pfam Leucine Rich repeat 263 279 IPR001611 GO:0005515
Stsc272021g00002 993 Gene3D Ribonuclease Inhibitor 495 599 IPR032675 -
Stsc272021g00002 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Stsc272021g00002 993 Gene3D Phosphorylase Kinase; domain 1 680 765 - -
Stsc272021g00002 993 FunFam Piriformospora indica-insensitive protein 2 234 329 - -
Stsc272021g00002 993 SMART serkin_6 681 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272021g00002 993 FunFam MDIS1-interacting receptor like kinase 1 117 223 - -
Stsc272021g00002 993 Gene3D Ribonuclease Inhibitor 280 378 IPR032675 -
Stsc272021g00002 993 Gene3D Ribonuclease Inhibitor 384 494 IPR032675 -
Stsc272021g00002 993 PRINTS Leucine-rich repeat signature 265 278 - -
Stsc272021g00002 993 PRINTS Leucine-rich repeat signature 526 539 - -
Stsc272021g00002 993 ProSiteProfiles Protein kinase domain profile. 681 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272021g00002 993 ProSiteProfiles Leucine-rich repeat profile. 264 287 IPR001611 GO:0005515
Stsc272021g00002 993 FunFam MDIS1-interacting receptor like kinase 1 766 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272021g00002 Stsc-Chr272021 8672 12160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272021g00002 1 993 Receptor kinase-like Gene Family AT1G08590 61.841 0.0 1224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc272021g00002 Pkinase 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272021g00002 - - gmx:100793873 1540.4